Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2389 109 8e-18 seq3515 86.0 9e-11 >seq2389 Length=61879 Score = 109 bits (120), Expect = 8e-18 Identities = 208/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 |||||| | |||||| ||||| | | |||||| || | || || ||||| || || Sbjct 41178 ACCTACCACCTCATGTC-CAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAACGC 41236 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 ||| || || | ||| || || || || || | |||||||||| ||| || Sbjct 41237 CGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTCCTAGTCGACATGAAGGACGACAGCAT 41296 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 || || ||||| ||||| |||||| || || | ||||||||| ||| || || || Sbjct 41297 TGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTAT 41356 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 ||| || || ||| | || || | ||| | || | || |||||||||||| Sbjct 41357 CGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTATATTGCCGGCACCAACGGCAC 41416 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | | ||||||||||| || || ||| |||| || | ||||| ||||| Sbjct 41417 ATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTGACCA 41476 Query 260182 GTGC 260185 | || Sbjct 41477 GGGC 41480 Score = 96.9 bits (106), Expect = 5e-14 Identities = 331/509 (65%), Gaps = 24/509 (5%) Strand=Plus/Plus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| || | |||||||||||||| | || | ||||||||| ||| | || ||||| | Sbjct 42385 AGCACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCCACCTCGCAAA 42444 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTG 263031 | ||||| |||| ||| || ||| ||| |||| |||||| ||| |||||| || Sbjct 42445 TTCTGGGTAACAATGAGTGCTTTGAGC-CATACACGTCCAACATTTACCAGCGCCGTGTC 42503 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGC 263091 | | || || || || ||||||| | || ||||| | || | || Sbjct 42504 TTGGCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGT 42563 Query 263092 CTGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTT 263151 || ||| || | | | |||| ||||||| | | || || | ||| | | Sbjct 42564 CTCTGGTCGGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATC 42623 Query 263152 GACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCC 263211 | | | || |||| |||||||||||| ||||||||| |||||| | | Sbjct 42624 CCCAATA------TCCCCGCCGACATCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCT 42677 Query 263212 AACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCG 263271 | || || | ||||||||||| |||| ||| | |||||||| ||||||| Sbjct 42678 CAGCGTCATGTTATCCAGATGGCGGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCG 42737 Query 263272 CTCAACCTGTACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTAT 263328 |||||| | || | || || || || | ||| |||| || |||||| | | Sbjct 42738 CTCAACGTTCACATGAAGGATCCTACTATGGGCAAGA---TCACCTCTATGCAC---TTT 42791 Query 263329 GCGTGGC-----GTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTG 263383 || |||| || | || |||||||| ||||||||||| ||||||| | | | |||| Sbjct 42792 GC-TGGCTGGAAGTTG-GGTCTCAAGACGGGCATGTACTACTTGCGCACGCAGGCTGCTG 42849 Query 263384 CCAACGCCATTCAATTCACCGTCGATCAG 263412 | |||| || |||||||| |||||| Sbjct 42850 CTGCACCCATCCAGTTCACCGTAGATCAG 42878 >seq3515 Length=139295 Score = 86.0 bits (94), Expect = 9e-11 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 1456516 CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCC 1456575 |||| | || ||| ||| || || | || ||| |||||||| | | |||| | ||||| Sbjct 85189 CAAGGACATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCC 85248 Query 1456576 GGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCC 1456635 | || ||| | ||||||||||||| | || ||| || || |||||| ||||||||| Sbjct 85249 GTGTGCTCTCCTAGGCATGAACGCCA-CACTGATGAAGCAATATATTGAA-TTTGTCGCC 85306 Query 1456636 GACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCC 1456695 || ||||| | | || || || | || ||| ||| || |||||||| ||| Sbjct 85307 GATCGCCTATTGGTTGCTCTTGG-TAACGAAAAGGTGTACAAAACCGCCAACCCCTTCGA 85365 Query 1456696 ATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 | |||||| || || | | |||||||| ||||| |||||| Sbjct 85366 TTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAG 85411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177447673022578