Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2753 138 1e-27 seq2339 113 4e-20 seq2517 111 1e-19 >seq2753 Length=281039 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || |||||||| || |||||||| ||| | Sbjct 118008 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 117949 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || ||||||||||| ||||| || | || |||||||||| ||| Sbjct 117948 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 117889 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||| | |||| | | |||||| || ||||| Sbjct 117888 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 117830 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || ||||| | ||||| || || |||||||| Sbjct 117829 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 >seq2339 Length=71557 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| || || || ||||| || |||||||||||| | Sbjct 18253 CCACCACGCAGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCTC 18312 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || ||||| || | || |||||||| | ||| Sbjct 18313 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGG 18372 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||| || | | | | | ||||| |||||||| Sbjct 18373 ATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTGTCAGAAGATTCCACT 18432 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || ||||| || || ||||| || ||||| Sbjct 18433 TCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 18479 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||| ||||| |||| | || || | || ||||||||||| || || || Sbjct 18745 TCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAG 18804 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| |||||||| || | ||| | | ||||||||| ||||| ||| | | | Sbjct 18805 ATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTTGACATTG 18864 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||| | ||||| || || || |||||||| || ||| Sbjct 18865 TCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACA 18924 Query 35726 AATATCTGCAT 35736 | | | ||||| Sbjct 18925 ACTGT-TGCAT 18934 >seq2517 Length=100120 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| |||| || |||||| |||| || |||||||| || || || | Sbjct 66511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 66452 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | |||| || ||||||||| ||| || ||| | | | Sbjct 66451 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 66392 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||| | ||||| || || ||||||| ||| || || | Sbjct 66391 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 66332 Query 35727 A 35727 | Sbjct 66331 A 66331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450772361986520