Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2339 134 1e-26 seq2753 113 5e-20 seq2517 107 2e-18 >seq2339 Length=71557 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | |||||||| || || || ||||| |||||||||||||| | Sbjct 19013 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAA 19072 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || || || || | ||||||||| || ||||| Sbjct 19073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGG 19132 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | ||||| ||||| || || Sbjct 19133 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGACC 19192 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||||||| || ||||| | || || ||||| |||||||| Sbjct 19193 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | |||||| || | ||| |||||| || |||||||| |||| | ||| | Sbjct 18262 AGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCTCAGCGTGCGG 18321 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || |||||||| | || ||||| ||||| || ||||| || Sbjct 18322 CCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCC 18381 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| ||| | ||||| || |||||||| || | ||| Sbjct 18382 TTGTCCTGAATCTTGGATTTGACATTGTCGATGGTGTCAGAAGATTCCACTTCCAAGGTA 18441 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || ||||||||||| Sbjct 18442 ATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 18479 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || |||||||| ||||| ||||||||| Sbjct 18709 CCACCACGGAGGCGGAGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAG 18768 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| ||||| || || ||||| ||||||||||| || || Sbjct 18769 AGAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGG 18828 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || ||||| ||| | |||||||| || || || Sbjct 18829 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 18888 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 || || || ||||| || ||||| ||||| || || Sbjct 18889 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 18923 >seq2753 Length=281039 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||| ||||| || ||||||||||||| | |||| | Sbjct 117999 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 117940 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || ||||| || | || ||||| || || || ||||| || Sbjct 117939 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCC 117880 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| || || || Sbjct 117879 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 117820 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | ||||| |||||||| ||||| ||| Sbjct 117819 ATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 117778 >seq2517 Length=100120 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | ||| || ||| || ||||| ||||| || || | Sbjct 66511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 66452 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| || || || ||||| || || ||||| ||||| ||||| || Sbjct 66451 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 66392 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || || ||||| || || || | ||| || |||| Sbjct 66391 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 66332 Query 134704 AA 134705 || Sbjct 66331 AA 66330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505374589417880