Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2389 190 3e-43 >seq2389 Length=61879 Score = 190 bits (210), Expect = 3e-43 Identities = 962/1521 (63%), Gaps = 38/1521 (2%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| |||| || || | || |||||| || || ||||| || | | Sbjct 42520 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 42461 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||||||||| | || || || || ||||| || || | || || Sbjct 42460 TCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 42401 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || ||| || |||| | || || |||| | ||| ||||| | ||||| Sbjct 42400 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA 42341 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || |||||||| | ||| | || ||||| || | || || || || | Sbjct 42340 GGCTTGACATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAG 42281 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || |||| || || || || ||| | || | ||| ||| || Sbjct 42280 GTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAG 42221 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || || ||||| |||| ||| ||||| || | || || || ||||| || | Sbjct 42220 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGC 42161 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | || ||| || || || | |||||||| |||| |||||| |||| ||||| | | Sbjct 42160 AGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATG 42101 Query 69139 TTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || | || | ||| || ||| || |||| || | ||| || || || || || || Sbjct 42100 TT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 42042 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA-- 69255 ||||| || |||| | || || | || || | || || | || || ||| | Sbjct 42041 ACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTA 41982 Query 69256 ----ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATT 69311 ||||| | || || | ||| || | || || || || ||||||| || Sbjct 41981 GTCGACAAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCAACCTCATCAGGG-- 41924 Query 69312 TGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 ||| || | || ||||| || || || || | || || ||||| || | Sbjct 41923 -GCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 41865 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || |||||| |||| ||||| |||||||| || ||||| || | || ||||| | Sbjct 41864 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGT 41805 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA---ACG 69485 ||| || |||| || || | ||| | | ||| || |||||| ||| Sbjct 41804 CTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA---GTCTTGCGGCCACG 41748 Query 69486 CTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCC 69543 ||| ||||| || | ||| | |||| || || || || || | |||| || Sbjct 41747 GCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAGCC 41690 Query 69544 AATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTCGT 69600 | || || || || || |||||||| | | ||| ||| | | ||| || || Sbjct 41689 AGGCCGGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTCTTTTCGACGCGC 41633 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||| || ||||| || ||||| ||||| | ||||| || | | | |||||||| Sbjct 41632 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCC 41573 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || || ||| | ||| ||||| || | | ||| | ||||| || || ||| Sbjct 41572 TTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGA 41513 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || ||||| || || || ||||| || | ||||||||||||||| Sbjct 41512 TAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTG 41453 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || |||| | ||||| ||||| || || || ||| | || || || || | ||||||| Sbjct 41452 TTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATATAA 41393 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || || || | | || || || || ||||| || ||||| Sbjct 41392 GAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATC 41333 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| || | ||||| || ||||| || ||||| || || |||||| | Sbjct 41332 ATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACT 41273 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || ||||| ||||| ||| || || || || || || | |||||| || ||| Sbjct 41272 AGGAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCG 41213 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA----GCTGATTCTATATC 70076 || ||||| || || | || | ||| ||||| | | ||| | | | | || Sbjct 41212 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTCAATGT-TGTC 41154 Query 70077 CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTT 70136 | | ||| || | ||| || ||||| | ||| ||||||||||| || || | || Sbjct 41153 TCCC---CAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTT 41097 Query 70137 ATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGA 70196 || | ||| | || |||||| | |||||||| || || ||||| || | || Sbjct 41096 GCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTT 41037 Query 70197 AAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| | ||| Sbjct 41036 GAAGTCTCTGTCGTAGACAAT 41016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686876438009160