Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3515 96.9 3e-15 >seq3515 Length=139295 Score = 96.9 bits (106), Expect = 3e-15 Identities = 203/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| || || | || || || ||||| || ||||| | ||| || Sbjct 84530 ATTTGGCAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 84589 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTG--CATTAAAACCACAA-GAAAAACATTTTATATC 43845 | || ||||| |||| |||||| | | | | || | || ||| | || || || Sbjct 84590 TCCAAGGACTT-GCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTC 84648 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 ||||||| || |||||||| ||||| || ||||||||||| ||| || || Sbjct 84649 ACACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGCG 84708 Query 43906 GTTT-GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 || ||| || ||||| | || || || || || || ||||| || || || | Sbjct 84709 TTTCAGCGGC-GAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 84767 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | || |||||||| || |||| ||| ||| ||||| |||| ||||||||||| Sbjct 84768 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATTGATAGCTACATCAAAGA 84822 Score = 87.8 bits (96), Expect = 1e-12 Identities = 328/508 (65%), Gaps = 26/508 (5%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTT 44134 ||||||||||||||| || ||||| | || ||||| || | | || | Sbjct 84938 AAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGCTTG 84997 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || || || | |||||| ||||| ||||| || | ||||| | || || ||| Sbjct 84998 GTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCTGG 85057 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| || ||| ||||||| || | || || || || || | || |||||| Sbjct 85058 CTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCCAACGAACTTATCTCCCGTGAT 85117 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTGTT--ACTTGGATATCTAGGAGACGATAAGC 44312 || || || || || ||||| || |||| ||| | || | || | ||| || Sbjct 85118 GAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAGCAC-CGA---GC 85173 Query 44313 CTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTA 44372 | || | || | ||| | || ||| | || || || || || ||||| ||| Sbjct 85174 CAGCAAGCAA-ATAATCAAGGACATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTT 85232 Query 44373 TGACAACAGCATTACC-TGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATAT 44431 |||| || | || ||| | | |||| ||||| | ||||||| |||||| Sbjct 85233 TGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAACGCCACACTGATGAAGCAATAT 85291 Query 44432 ATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTA 44491 ||||||| | || ||||| || | | | || ||| ||| || |||| Sbjct 85292 ATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAA-------GGTGTA 85344 Query 44492 CAA-------AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTT 44544 ||| ||||| || ||||| ||||| || ||||| |||| ||||| |||||||| Sbjct 85345 CAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTT 85404 Query 44545 TTTTGAAAAACGCGTTGGAGAATATCAG 44572 || || ||||| ||||||||||||||| Sbjct 85405 CTTCGAGAAACGAGTTGGAGAATATCAG 85432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437742982845