Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2339 91.5 1e-13 seq2389 82.4 6e-11 >seq2339 Length=71557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||||||| | ||||| || || ||||||||||||||| | Sbjct 18481 CCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 18540 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || |||||||| || ||||| | || || |||||||| || || || Sbjct 18541 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGA 18600 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||| || | | || | || || | | ||| ||| Sbjct 18601 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 18660 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| ||||| |||| ||| || || ||||| |||||| Sbjct 18661 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 18708 >seq2389 Length=61879 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || |||||||||| ||| || | |||||||||| |||| | || |||||| | Sbjct 42520 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 42461 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || ||||| || | ||||| | || | |||||||||||| || | | | || Sbjct 42460 TCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 42401 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || |||| ||||||| | |||| | ||||| | ||||| ||||| | | | Sbjct 42400 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA 42341 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGA 130993 || |||||| |||||||| || || || || || |||| ||||||| Sbjct 42340 GGCTTGACA---TTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGA 42293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424914880771128