Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2389 309 4e-79 >seq2389 Length=61879 Score = 309 bits (342), Expect = 4e-79 Identities = 1174/1808 (65%), Gaps = 51/1808 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 42829 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 42771 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGC 110485 | ||| || ||| | |||| | ||| | ||| |||| |||| || ||| Sbjct 42770 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 42713 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || || | |||||||| | || |||| | ||| |||||||| || ||| Sbjct 42712 CCGCGATCGGCCGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAG 42653 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 ||| |||||| || | ||||||| | ||| ||||| |||||||| | | | Sbjct 42652 AGAGCCTTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATG 42593 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | |||||| | | ||||||||||| || | ||| || |||| ||| Sbjct 42592 ATGCGGTTCTTCATGGCATCCGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAG 42533 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||| | || ||||| || | | | | | |||| ||||| | |||||| Sbjct 42532 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 42473 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||| ||||| ||||||| ||||| | ||||||||| || ||||| || || Sbjct 42472 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCG 42413 Query 110786 ATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 | || || || ||| |||| ||| | ||||||||| | ||||| ||| ||||| | Sbjct 42412 AGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 42355 Query 110844 CGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGC 110901 | | | || || || || |||| ||||||| |||||||| | |||| || || Sbjct 42354 CCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAACTGAAGAATACCTTCCGAGGC 42297 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 110961 |||||| |||| ||||| |||| ||||| ||| |||| ||| || | || Sbjct 42296 GGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTG 42238 Query 110962 -CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 ||||| ||||| || ||||| || ||||| | || | ||| ||| || | Sbjct 42237 TCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAG 42178 Query 111021 AATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 | || || | ||| || | || ||| | || || ||||| |||||||| | ||| Sbjct 42177 ACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCG 42119 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || |||| |||||||| || || || || ||||| ||| ||| || ||| Sbjct 42118 ATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCA 42059 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| || || | || | | |||| || || || || | | || Sbjct 42058 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCG 41999 Query 111200 AAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | || ||| | | | |||| | ||||| || | || ||||| ||||| || Sbjct 41998 TAGCGGCCT-TCTTTGTAGTCGACAAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACAC 41940 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| |||||| | |||||| | || || || || | |||||| || ||| Sbjct 41939 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAAT 41880 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||||| ||||| ||||| ||||||| ||||||||||| ||||| |||| Sbjct 41879 GGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGG 41820 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAA 111437 | ||||| || ||||| || | ||| || | | ||| | | || | ||| | || Sbjct 41819 GTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG---AA 41764 Query 111438 TGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | | || |||| || ||||| ||| ||||| |||||| || ||||||||||| Sbjct 41763 TAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTC-G 41705 Query 111495 CCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 ||| || || | || || || || || ||||| | || | ||| | || | | Sbjct 41704 CCATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAAT--CCCCGT 41647 Query 111554 TC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTAC 111611 || || || ||||||||||| || ||||| |||||||| | ||||| || | | Sbjct 41646 TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 41587 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || ||||| | || ||||| ||| || ||||| || || | | ||| |||| Sbjct 41586 CACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGT 41527 Query 111672 GCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATTT 111724 |||| ||||| |||||| | ||| || || ||| | | ||||| || | Sbjct 41526 GCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCC----TGGTCA 41471 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 || || | || ||| ||| || || |||||||| ||||| || || | ||| || Sbjct 41470 ACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCG 41411 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || |||| ||| | || | | |||| || || || ||||| Sbjct 41410 TTGGTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCA 41351 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 |||||| ||| ||||| ||||| | | ||||| | |||||||||| || | Sbjct 41350 CCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTG 41291 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| || ||| ||||| ||| |||| ||| | || ||||| || ||| Sbjct 41290 TCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTG 41231 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 112022 ||||| || |||| ||||| ||| | | |||| |||||| || ||| || |||| Sbjct 41230 AAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTTTCCA 41173 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | || ||||||| || || || |||| || || ||||| | ||||| ||| | Sbjct 41172 AAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAG 41113 Query 112083 GGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 112141 | || | || |||| | ||| ||||||| | || |||| || || |||| Sbjct 41112 GTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTGAAG 41054 Query 112142 CCAAAGTA 112149 |||||||| Sbjct 41053 CCAAAGTA 41046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628002411842400