Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2389 336 3e-87 seq2938 102 1e-16 seq3515 100 4e-16 >seq2389 Length=61879 Score = 336 bits (372), Expect = 3e-87 Identities = 1147/1771 (65%), Gaps = 31/1771 (2%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 42867 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 42808 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 42807 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 42748 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||| | ||||| || ||||| ||| || ||||| |||||||| | || | Sbjct 42747 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCCGCCATCTGGATAA 42688 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 ||| | || ||||| || ||| ||||||| ||| || || | ||||||| Sbjct 42687 CATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATAT 42628 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101 ||| || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 42627 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCCG 42571 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 42570 ACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 42511 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 42510 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 42451 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||| ||||| | |||||||| ||||||||||| || | || | ||| || | || Sbjct 42450 CCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 42391 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCC 118339 | | ||| | || | ||||| ||| |||||| | | | | || | || | Sbjct 42390 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAG--AAGGCTTGAC 42333 Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 | |||||| || ||||| || ||||||| || || || || |||| || || || Sbjct 42332 ATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 42273 Query 118400 TGGGCCCTCAACCTCCGCCAATTC-GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 ||||| | | | |||| || ||| || ||||| ||||| || || || | Sbjct 42272 GGGGCCTTGCTCTTTGGCCAGCTCAAGAG-AGGCTGTCAGGGCAGCGTGGTAGATGGTCT 42214 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AA 118517 | || || | || | | ||||||| || || || | | | ||| | | Sbjct 42213 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAA-GGGCATGCGCAGAGCA 42155 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 42154 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 42095 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| ||| | ||| ||| || ||| || | | | || || || | | Sbjct 42094 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 42035 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT-TCATTGAC 118696 || || | |||| || || ||||| | | | || | | || ||| | | | ||| Sbjct 42034 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGC-CTTCTTTGTAGTCGAC 41976 Query 118697 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 118756 | | |||||| || | || |||| || ||||||| |||||| || ||| Sbjct 41975 AAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCAACCTCATCAGGGGCACAGTA 41916 Query 118757 CTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 118816 ||| || || |||||||||| ||| || || |||||| |||| |||||| || || Sbjct 41915 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 41856 Query 118817 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 118876 |||| |||| || ||||||||||| ||||| | || | ||||| || || ||||||| Sbjct 41855 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGACTC 41796 Query 118877 GAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCT 118935 ||| || | | ||||| | || | || | | ||| | | | || ||||| || Sbjct 41795 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 41737 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 118995 | ||||| |||||| || |||||||| || || | || | || || || || Sbjct 41736 CATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCGGGGCACT 41677 Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055 | || || | ||| | ||| | || || || || |||||||||||||| |||| Sbjct 41676 CGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTG 41617 Query 119056 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 119115 ||||||| || || |||||| || ||| || |||||| | || || || | Sbjct 41616 GGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTC 41557 Query 119116 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 119175 |||| || | |||||| | | ||| |||||||| || || || || | || | || | Sbjct 41556 GCAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCAC 41497 Query 119176 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 | | | || || |||||| || || || |||||| ||| || ||||||| Sbjct 41496 C---AGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAA 41440 Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC 119289 |||| |||||||| || | |||| ||| || || || |||| ||| | || | Sbjct 41439 GCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCAC 41380 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 || ||||| || || || ||||| || ||| ||| ||||| || || | Sbjct 41379 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT 41320 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 ||||| || ||||||| || || || ||| |||| | ||| ||||| || | Sbjct 41319 TGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAG 41260 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 ||| ||| ||| ||||| ||||||||||| || |||| |||||| ||| | | Sbjct 41259 ACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAG 41202 Query 119470 CTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACC 119527 |||| |||||| || |||||| ||||| ||| ||||| || || |||||| Sbjct 41201 CTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTCAATGTTGTCTCCCCAAATACC 41142 Query 119528 GATCGAGACCCGCATAAACATGTATTGGGGT 119558 || || || ||||||| ||||| || ||| Sbjct 41141 GACCGCAACGCGCATAATCATGTGCTGAGGT 41111 >seq2938 Length=379567 Score = 102 bits (112), Expect = 1e-16 Identities = 226/333 (68%), Gaps = 12/333 (4%) Strand=Plus/Plus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACGGGCAA 14291 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 319947 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAGGGCGACTTGGCTTT----GGCAG 320002 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 320003 CACTAAAGAGCTCTCGGACTCGCTTGGCACCCACACCGACAAAGATTTCGTCGAA-TTCA 320061 Query 14352 CGGCGGAACAT-TGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | | | |||| | || |||||| ||| || |||||| || | |||||| || || || Sbjct 320062 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 320121 Query 14411 GTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 14469 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||||| Sbjct 320122 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 320180 Query 14470 GCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 14529 | | || | |||||| | || || || || || | ||||| | || ||||| || Sbjct 320181 GTCGGAGAAATTTTCAGGGTTCTTGAGAAACTCAACCACTTCTTGTAGCTCTTCCTTGGC 320240 Query 14530 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 14562 |||| || | ||||| ||||| || || Sbjct 320241 CTCGTCACAACCGTGCACGTCGCTGAATCGGGT 320273 >seq3515 Length=139295 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 85140 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGAGAAGGTGAGGCCG 85081 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 85080 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 85021 Query 130136 CCCTCCACACACGCGAACGC 130155 ||||||||| ||||| || Sbjct 85020 CCCTCCACAGCAGCGAAAGC 85001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618406063971640