Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2389 268 1e-66 seq3515 107 2e-18 >seq2389 Length=61879 Score = 268 bits (296), Expect = 1e-66 Identities = 1115/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | |||||||| || |||||||| || || ||||||| || Sbjct 41112 CCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTT 41171 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 ||||| || ||| || |||||| |||| | | ||| ||||| |||| || |||| Sbjct 41172 TTGGAAACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCTACACTCT 41229 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || | || |||| ||| ||||| ||| || ||||| | Sbjct 41230 TCAACGCCGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTCCTAGTCGACATGAAGGACG 41289 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | ||||| | | ||||| ||||| ||| ||||| Sbjct 41290 ACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTG 41349 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | || | ||| |||| || || | Sbjct 41350 GTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTATATTGCCGGCACCA 41409 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || ||| | || || ||||| |||||||| || || ||| ||| || | || | Sbjct 41410 ACGGCACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACG 41469 Query 104580 TAAATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGT------CTATCTTGAGCCATGG 104632 | | || ||||| | | ||| || || ||| | |||||| ||||| ||| Sbjct 41470 TTGACCA----GGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTATCTCGAGCCTTGG 41525 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| ||| | | || || ||||| ||||| ||||| || | || || || Sbjct 41526 CACGCAGATGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCG- 41584 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| |||||| ||||| ||||| |||||||||||||||||| | || || | Sbjct 41585 TGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAA 41644 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || || ||||| | ||| | ||||| || || || || || | ||| | || Sbjct 41645 GAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGATTGCTATGG 41704 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGG 104870 ||||||||||| || || ||| ||||| ||| || || || ||| | ||| Sbjct 41705 CGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTA 41763 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | | ||| | | || ||| |||| || || || || || | || Sbjct 41764 TTCGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACAGAAACGGGCAACCCC 41822 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | ||||| ||||| || ||||| ||| |||||| || || ||||| |||| || Sbjct 41823 TTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATT 41882 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || ||||| || || || || ||| | || | | | |||||| |||||| Sbjct 41883 CGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTG 41942 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGA 105108 || ||| | || || | ||||| || | ||| || | | | | || | | | || Sbjct 41943 TGCAACTTGGCCTCTCTTGCTCTTCCTGCCTTTGTCGA-CTACAAAGAAGGCCGCTACGA 42001 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || |||||||| || || || ||| | ||||| |||| | ||||| Sbjct 42002 CTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGA 42061 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || ||||||| ||||| ||||| || || ||| |||| || || || || Sbjct 42062 TGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGG 42121 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | |||||||||||||| || || | | ||| | || || ||| | || || || Sbjct 42122 TGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTC 42180 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || || |||| || || || |||||||| || ||||| || || | Sbjct 42181 CCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCTGACAG 42240 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | ||| |||| | | | || || || ||||| |||| ||||| || | Sbjct 42241 CCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCT 42300 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACG 105461 | |||| | ||||| || || |||| |||| || |||| |||| | | Sbjct 42301 CGGAAGGTATTCTTCAGTTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGG 42354 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| ||| ||||| | ||||||||| | ||| |||| ||| | || | | Sbjct 42355 AGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAACTCGTTGCTGCTCG 42414 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||||||||| | ||||| ||||||| ||||| |||||||| || | Sbjct 42415 CTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 42474 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 42475 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 42534 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 ||| | | || ||| || || ||||||||||| | | |||||| | | ||| Sbjct 42535 GGCTCCTCAAGGATCTCGTCGATATGGGTCTCTGGTCGGATGCCATGAAGAACCGCATCA 42594 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 | | | ||||||||||| || || |||| || || || ||| | | Sbjct 42595 TTGCCGAGAACGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTCTCT 42654 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || |||||||| || | |||| || | ||||| || ||||| ||| Sbjct 42655 ACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCGGCCGATCGCGGTG 42714 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 ||| || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 42715 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAA 42772 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 42773 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 42830 >seq3515 Length=139295 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||| ||| |||| | | |||| |||||||||||||| || Sbjct 85012 TGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCTGGCTCAAGAAGCGTGG 85071 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 ||| ||||| || ||| |||||||||||| |||||||| ||||| ||||| | ||| Sbjct 85072 TCTGATGCCCGGCCTCACCTTCTCCAACGAACTTATCTCCCGTGATGAGGGTTTGCACAC 85131 Query 94947 AGAGTTTGC 94955 ||| ||||| Sbjct 85132 AGACTTTGC 85140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583233321125560