Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq157 181 3e-40 seq2339 172 2e-37 seq3424 98.7 3e-15 seq2753 98.7 3e-15 >seq157 Length=27557 Score = 181 bits (200), Expect = 3e-40 Identities = 491/742 (66%), Gaps = 16/742 (2%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||| | || ||||| || ||||| || || ||||| || ||| | | | |||| | Sbjct 17147 CCGCTGTTGGTATCGACTTGGGTACCACGTACTCTTGCGTGGCTATCTATCGCGATGACC 17206 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | ||||| ||| | ||||| || |||||| |||| || ||||| | || ||||| | Sbjct 17207 GATGCGAAATTATTCCCAATGAGCAGGGTAACCGAACTACTCCATCTTTTGTCGCATTCA 17266 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 || || |||||| ||||||||||| | || || ||||| | ||| || || ||| Sbjct 17267 ATGACACCGAGCGTCTGATTGGTGATGCCGCCAAGAATCAGGTCGCTATGAACCCTCAAA 17326 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA--- 349432 | || || || || || || || | ||||| | ||||| ||| ||| | Sbjct 17327 ACACCGTCTTCGACGCCAAACGTTTGATTGGCCGCAAGTT----CGAC-GATCCGGAGGT 17381 Query 349433 -CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAAT 349491 || ||||| | || || ||||| || | || || |||||| | ||||| || Sbjct 17382 TCAGGCTGATATGAAGCACTTTCCCTTCAAGGTGATT--GAAAGAC-AAGGCAAACCTAT 17438 Query 349492 TATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 | |||| |||| ||||| ||| | || |||| ||| |||||||| || || || Sbjct 17439 GGTCAAGGTCGAATTCAAAGGCGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCAT 17498 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 | | | | || ||| || ||||| || | | || || | | || | || Sbjct 17499 GATCCTCATCAAGATGCGCGAGATTGCAGAGGGCTTCTTGGGCACATCGGTCCCGAGCGC 17558 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 ||| | ||||| || ||||| || || || | ||||| || || || || || || Sbjct 17559 TGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGG 17618 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 ||||||| || | || || || | || || || || || ||||| || || ||||| Sbjct 17619 TCGCATTGCCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGC 17678 Query 349732 ATATGGGCTTGATAAAATGAGT-GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 ||||| || || || | ||| || || ||| | | ||||| ||| |||| | Sbjct 17679 CTATGGTCTCGACAAGA-AAGTCGAGGGTGAGCGCAATGTCTTGATTTTCGATCTAGGCG 17737 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 | ||||| || ||||| || || || ||| |||| ||||| || || || || || | | Sbjct 17738 GCGGTACCTTCGATGTGTCTCTCCTCACAATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 17797 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | || ||||| || || | ||||| || || || ||||| || || ||| || |||| Sbjct 17798 CCGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGATAACCGCCTTGTTAACCACTTTG 17857 Query 349911 TTAAAGAATTTAAGCGTCAAGC 349932 | || ||||| || || ||||| Sbjct 17858 TCAATGAATTCAAACG-CAAGC 17878 Score = 150 bits (166), Expect = 5e-31 Identities = 458/706 (65%), Gaps = 9/706 (1%) Strand=Plus/Plus Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | ||||| || |||||||| ||||| || | || ||| | | |||| Sbjct 17967 TGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAAA 18026 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | | ||||| ||||||||||| || || | ||||||| | ||||||| || | Sbjct 18027 CTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGG 18086 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || ||||| | ||| ||||||||| | | || || | ||||| || | Sbjct 18087 CCCGTTTCGAAGAGCTTTGTCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGACCGTG 18146 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | | || || || || |||| ||| || |||| | || || |||||||||| Sbjct 18147 TTCTCACCGACGCCAAGATTGACAAATCTCAAGTTTATGAGATTGTCTTGGTTGGTGGTT 18206 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || || ||||| | | || | | | || || | || || |||||||| || Sbjct 18207 CCACCCGAATTCCCCGAATCCAGAAACTCATCTCCGACTACTTCAACGGCAAAGAGCCCA 18266 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 | || || || || || || |||||||| || ||||| ||||| ||||| |||| | Sbjct 18267 ACAAGTCTATCAACCCTGACGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCTATCT 18326 Query 350325 TATCTGGAAATAAGAGTTCT--AAA----ATTGATGATCTATTACTACTAGATGTAACTC 350378 | ||||| | | | |||| ||| | | || | || ||||| || || ||| Sbjct 18327 TGTCTGG---TGACACTTCTTCAAAGTCTACCAACGAAATCTTGCTACTTGACGTCGCTC 18383 Query 350379 CACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATA 350438 | | || || || | || || | |||| | | ||||| || ||||| | || | Sbjct 18384 CCTTGTCTCTGGGCATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGTAACA 18443 Query 350439 GTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGG 350498 || | || || || ||||| | ||| || || ||| | || || ||||| | || Sbjct 18444 CAACCATTCCAACCAAGAAGTCGGAGGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGG 18503 Query 350499 TAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAG 350558 | ||||| || ||||| || || || ||||| || || || || | || Sbjct 18504 TGCTCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTCATGGGCA 18563 Query 350559 AATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTT 350618 | ||| || | || ||||| || || | || ||||||||||| ||||| | | Sbjct 18564 AGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATCGAAGTTACCT 18623 Query 350619 TCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 | ||| | ||| | |||||||| | ||||| | || |||||||| Sbjct 18624 TTGATCTCGATGCCAATGGTATCATGAATGTCTCTGCTGTTGAAAA 18669 >seq2339 Length=71557 Score = 172 bits (190), Expect = 2e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | ||| ||||||||||| || |||||||| | Sbjct 18473 TTTGCATACCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGT 18532 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || ||||| ||||| || || || || || |||||||| || || || || | Sbjct 18533 AGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGT 18592 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| ||||| ||||| |||| ||||||||||| |||| ||| || | Sbjct 18593 CAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAG 18652 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | ||||| ||||| || || | || || || || |||||||| Sbjct 18653 ATTCGACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 167 bits (184), Expect = 7e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| || ||||| || ||||| || ||||| || | Sbjct 19005 TTTGCATACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGT 19064 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || ||||| ||||| || |||||||| ||||||||||| ||||| | Sbjct 19065 AGTCAGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGT 19124 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || ||||| || ||||||||||| || | || ||||| ||||| | ||||| | Sbjct 19125 CAGGCGGGATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGACG 19184 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| ||||| || || || || || || ||||| Sbjct 19185 ACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239 Score = 147 bits (162), Expect = 7e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| ||||||||||| || || |||||||| || || Sbjct 18705 CATACCACCACGGAGGCGGAGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTC 18764 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||| ||||| | || ||||||||||| Sbjct 18765 GGAGAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGG 18824 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || |||||||| || | || ||||| || || | || || | || Sbjct 18825 AGGGATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTC 18884 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || ||||| || | ||||||||||| | || || |||| Sbjct 18885 GACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACAA 18925 >seq3424 Length=96089 Score = 98.7 bits (108), Expect = 3e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||| ||||| ||||| || || ||||| | ||| || | |||||||||||| |||||| Sbjct 3175 ACACCGGCAAAATGGAACGTGTTCAGAGTCATTTGCGTGGCGGGCTCACCAATAGACTGC 3234 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 ||||| | |||||| |||||||| ||||| |||||| Sbjct 3235 GCTGCCAGAACGCCGACCATTTCACCAGGGCTGACAA 3271 >seq2753 Length=281039 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || ||||| || || || || ||||||||||| || |||||||| || || ||||| Sbjct 117945 GTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATG 117886 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || | || || || || || | || || | || || ||| Sbjct 117885 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCA 117826 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| || || || ||||| || ||||||||||| Sbjct 117825 AGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515181227891507