Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2389 217 2e-51 seq2816 84.2 2e-11 >seq2389 Length=61879 Score = 217 bits (240), Expect = 2e-51 Identities = 453/670 (68%), Gaps = 6/670 (1%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || |||||| | || || || |||||||| ||||| || |||| |||| Sbjct 41204 CTTCACCCACGCCTCACCTACACTCTTCAACGCCGGTACCCCCCAATGTCAGCTGTCTTC 41263 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 || ||||| || | |||||||| ||| || ||||| |||||||| || |||||| Sbjct 41264 TTGTTTCCTAGTCGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGAC 41323 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGT 53449 |||||| ||||||||| | | ||||||||||| | || || | || ||||| Sbjct 41324 CTGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG--TCCACCGCATCCGT 41381 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || | |||| | || || || |||||| || | || ||| | || ||||| Sbjct 41382 GCTACCGGCTCTTATATTGCCGGCACCAACGGCACATCCAACGGCATCATTCCCATGCTT 41441 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 || |||||||||||||| ||| | ||||| ||||||| || ||||| || | Sbjct 41442 CGTGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAACAAGCGACCTGGTGCA 41501 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || |||||||| |||||||| |||||||| || | | || ||||| || |||| | Sbjct 41502 TTTGCCATCTATCTCGAGCCTTGGCACGCAGATGTGTTTGACTTTCTTGATTTGCGAAAG 41561 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGA 53688 || || || | ||||| | || ||| || ||||| || ||||||||||| || || Sbjct 41562 AACCACGGCAAGGAAGAAAACCG-TGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGA 41620 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||||||||| | || || ||| ||| ||| ||| ||| ||||| || |||||||| Sbjct 41621 TCTCTTCATGAAGCGCGTCGAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTG 41680 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT 53808 ||||||||| | | ||| || ||||||||| | | | || || ||| | Sbjct 41681 CCCCGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCG 41740 Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAG 53868 | ||||||| | |||| | || | || | ||| | | |||||| || Sbjct 41741 TGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGTC 41800 Query 53869 CCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAA 53928 |||| || ||||| | || | ||| ||||||||| | |||| |||||||| Sbjct 41801 CCAGACAGAAACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAA 41860 Query 53929 CCAGAAGAAC 53938 |||||||||| Sbjct 41861 CCAGAAGAAC 41870 Score = 111 bits (122), Expect = 2e-19 Identities = 305/454 (67%), Gaps = 25/454 (6%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||| | || || ||||| ||||| || || | || || |||| ||| Sbjct 42396 CGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTAAC 42455 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| || ||||| |||||| ||||||| |||| |||||| | | || ||||| Sbjct 42456 AATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAA 42515 Query 55604 TTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCT-GCAGAA---GATCAACAAGT- 55655 || || | || ||| | | ||| ||||||| || | || | || | || Sbjct 42516 TTC--CAGG-TCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCT-CTGGTC 42571 Query 55656 GGAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCT 55710 ||| || || |||| || || |||| |||||| ||| | ||||| || Sbjct 42572 GGATGCC----ATGAAGAACCGCATCATTGCCGAGAACGGT---TCCATTCAGAACATCC 42624 Query 55711 GGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769 | ||| | || | |||||| | ||| ||| || ||||||||| | ||| Sbjct 42625 CCAATATCCCCGCCGACATCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCTCAGCGTC 42684 Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829 | | || | ||| || ||||| ||||| | ||||||||||||||||| || ||| Sbjct 42685 ATGTTATCCAGATGGCGGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACG 42744 Query 55830 TCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 | |||| || ||||| | ||| |||| | | ||| ||||||||| || |||||| Sbjct 42745 TTCACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGT 42804 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| ||||||||||| |||||||| |||| || Sbjct 42805 TGGGTCTCAAGACGGGCATGTACTACTTGCGCAC 42838 >seq2816 Length=175175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 195/294 (66%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | || || ||||| |||||||| || || | || || Sbjct 52047 CGGGTGAAGGTATAACGAGGACTAGCGGCATCGGAACCACCTGCGAGACGGGAACCGAAG 52106 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| || | ||||||| || | |||||||| ||||| Sbjct 52107 TTACCGCTTGGCTCCAGGATATTAATATTGTTGGATCCAATAAAATTCTGTGCCAAGCCG 52166 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || ||| Sbjct 52167 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACGTAA 52226 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||| | || || || | Sbjct 52227 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTAAAGCAAGCATAGAGA 52286 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||| ||||| |||||||| ||||| | ||| || || |||||| || Sbjct 52287 ACCTTTCGCTGACCAGGTTTCAAGCCGTCAATGACGGACGGGATGGAACGCATG 52340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190219286200