Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2517 109 5e-19 seq2339 109 5e-19 >seq2517 Length=100120 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| |||| ||| | | || || |||||||| |||||| | || || ||||| || || Sbjct 66317 ATACACCATCCAGTT--TCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGA 66374 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 | || ||| |||| || | ||||| ||||| |||||||| || ||||| || || Sbjct 66375 GTCCTCGGACACGATCGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCC 66434 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 || || ||||| || || | ||| ||||| || | || ||| || ||| | ||||| Sbjct 66435 TGACCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGA 66494 Query 27161 TTACAACATTCAAAAGG 27177 ||||||||||| |||| Sbjct 66495 CTACAACATTCAGAAGG 66511 >seq2339 Length=71557 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 |||||||| || || || || || || ||||||||| | |||||||| || || || || Sbjct 19242 GCCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCG 19183 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| | ||||| | ||||| || ||||| || || || || || || || || Sbjct 19182 TCTGACACTATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCGCCTGAC 19123 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || |||||| |||| | ||| || || || | || || | ||| |||| || ||| Sbjct 19122 CAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCTGACTAC 19063 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| |||||||| || | || | ||| | || | || ||||| || Sbjct 19062 AACATTCAGAAGGAGTCAACACTTCACCTCGTTCTCCGCCTTCGAGGTGGTAT 19010 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| ||||||| | ||||||||| | || Sbjct 18479 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTGGAATCTTCT 18420 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||| ||||| || ||||| || ||||| || Sbjct 18419 GACACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 18360 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||||| || || |||||||| | || | |||||||||| Sbjct 18359 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGATTACAAC 18300 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| ||||| ||| | || | ||| |||| ||||| Sbjct 18299 ATCCAGAAGGAAAGCACCTTGCATCTCGTGCTTCGTCTGCGTGGTGG 18253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434897909906880