Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1251 95.1 1e-14 >seq1251 Length=400034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || || || || ||||||| | || || || || || || ||||| | ||| || || Sbjct 105939 GGCGTCAAAATTTGGGACGGCAATGGATCCCGCGAGTTCCTCGACAATCTGGGTCTCACA 105998 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || || | ||||| | || || || ||||| ||||| ||| | |||||||| || Sbjct 105999 CACCGTGAAGTAGGCGATCTCGGACCCGTGTACGGCTTCCAATGGCGGCACTTTGGCGCA 106058 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACG 34499 ||||| || | || ||| ||||||| | || |||||| |||||||| || | ||| Sbjct 106059 GAGTA-CGTCGATGCCAAGACGGACTACACCGGCAAGGGAGTCGACCAGCTCGCCG-ACG 106116 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 |||| |||| | ||| || || | ||| | ||||| | ||| | ||||||||| Sbjct 106117 TGATTGACAAGATCAAGAACAAGCCGTACGACCGGCGGATCATCATGAGTGCGTGGAACG 106176 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617 | |||||| | || ||||| | || || ||||| | |||||||||||| Sbjct 106177 CACGGGATCTACACCTCATGGCCTTGCCGCCCTGCCATGTATTTGCCCAATTCTACGT 106234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 |||||||||||| | ||||| || || | ||||| || | |||||| | | Sbjct 106234 ACGTAGAATTGGGCAAATACATGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCCGTGCG 106175 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 |||||||| | ||| | ||||| | ||| | || || ||| | |||| |||||| Sbjct 106174 TTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCAATCACG 106115 Query 6848 TACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCG 6905 | | || |||||||| |||||| || | ||||||| ||| || | || ||||| | Sbjct 106114 T-CGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCCGTCTTGGCATCGACG-TACTCTG 106057 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | |||||||| | ||| ||||| ||||| || || || | ||||| | || || || Sbjct 106056 CGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCGAGATCGCCTACTTCACGGTGTG 105997 Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || ||| | ||||| || || || || || || | ||||||| || || || || Sbjct 105996 TGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCAAATTTTGACGCC 105939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448241281237680