Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2339 84.2 1e-11 seq2753 82.4 5e-11 >seq2339 Length=71557 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||| | || ||||| || || || | ||||| || || | Sbjct 18479 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTGGAATCTTCT 18420 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | || ||||| || || | || || || || Sbjct 18419 GACACCATCGACAATGTCAAATCCAAGA-TTCAGGACAAGGAGGGCATCCCTCCCGACCA 18361 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || |||||||| || || |||||||||| ||||| | |||||||||| Sbjct 18360 GCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGATTACAA 18301 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || || || ||| || ||| Sbjct 18300 CATCCAGAAGGAAAGCACCTTGCAT 18276 >seq2753 Length=281039 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| || |||||||| || || || || || Sbjct 117779 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 117838 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 117839 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 117898 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || | || ||||| || || || || || || | ||||| | |||| ||| Sbjct 117899 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 117958 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 117959 AACATCCAGAAGGAG 117973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994073634652