Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3515 118 9e-22 >seq3515 Length=139295 Score = 118 bits (130), Expect = 9e-22 Identities = 326/492 (66%), Gaps = 12/492 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 ||||| || |||||||| || || ||||| | || ||||| || ||||| ||||| || Sbjct 85419 ACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTCCATGAAATCGAAG 85360 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | | ||||| ||||| ||||| || | | || || || ||| Sbjct 85359 GGGTTGGCGGTTTTGTACACCTTTTCGTTACCAAGAGCAACCAATAGGCGATCGGCGACA 85300 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGC 4450 ||||| ||||| || |||| ||| | ||| || || | | | | ||| || || || Sbjct 85299 AATTCAATATATTGCTTCATCAGTGTGGCGTTCATGCCTAGGAGAGCACAC-GGCAGAGC 85241 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | |||||||||||||| || || || || || ||||| || || || ||| | | Sbjct 85240 CTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATGTCCTTGATTATTTG 85181 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAA--ACAATAAACACGCAAAATCACAATGCAAA 4568 || | ||| | | |||| || | | ||| | ||| ||||| || |||||| Sbjct 85180 CTT-GCTGGCTCGGTGCTTAAG-ATGCGAGTGCAACAGACATGCAAAGTCTGTGTGCAAA 85123 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 || || || | | || |||||||| || || || | |||||||| | ||| | ||| Sbjct 85122 CCCTCATCACGGGAGATAAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAGACCACGCTTC 85063 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| || || | |||||| | || ||||| ||||| || || || || || Sbjct 85062 TTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCCACAGCAGCGAAA 85003 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAATCCATTTTAATGCCCAG 4745 || || || || ||| |||||| | ||||| | |||||| | |||||| Sbjct 85002 GCCACCAAGCGCTGGGCGA---AGCTGGAATCCTTGTCCTGAATCCAACGAATGGCCCAG 84946 Query 4746 TTAGCTTTTTTC 4757 | ||||||||| Sbjct 84945 TCTGCTTTTTTC 84934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427029983610077