Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3515 86.0 9e-12 >seq3515 Length=139295 Score = 86.0 bits (94), Expect = 9e-12 Identities = 195/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||| | ||| |||| || | ||| || |||| ||||||||||| || || Sbjct 84822 TCTTTGATGTAGCTATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATG 84763 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| ||||| || || || | || || | | ||| ||||| | || || ||| Sbjct 84762 ATCTGGAATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCA 84703 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||| || ||||| || || || ||| ||||||||| ||||| || | ||| || Sbjct 84702 AGCAAGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATG 84643 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| |||| | ||| | || ||||| || | | || || || | ||| Sbjct 84642 AAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCG 84583 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || ||||| || || || || || || || ||||| | ||| || Sbjct 84582 ATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACATCTGCCAAAT 84530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694636072416160