Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2389 197 2e-45 >seq2389 Length=61879 Score = 197 bits (218), Expect = 2e-45 Identities = 737/1148 (64%), Gaps = 22/1148 (2%) Strand=Plus/Minus Query 76087 AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || ||| || || || || |||||||| |||| ||| || |||| ||||| | | ||| Sbjct 42155 AAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCT 42096 Query 76147 AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 76206 | ||| || ||| ||||||| || | ||| || || || ||||| || | ||| Sbjct 42095 GTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGAC 42036 Query 76207 AACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC------AC 76260 || |||| | || || | || || | || || | || ||| | || Sbjct 42035 GACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGAC 41976 Query 76261 AAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA-- 76318 ||| | |||||| | ||| || | || || || || ||||||| || |||| Sbjct 41975 AAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCAACCTCATCAGG---GGCACA 41919 Query 76319 -TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTT 76377 || | || ||||||||||| || || | || ||||| || || | ||||| Sbjct 41918 GTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTT 41859 Query 76378 GCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 ||||||| |||| || | ||||| || || | ||| || | || ||||| |||| || Sbjct 41858 GCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGA 41799 Query 76438 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTC 76494 |||| || || | ||||| | ||| | | |||| ||| | | ||| Sbjct 41798 CTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCACGGCCCTC 41742 Query 76495 TCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 | ||||| || | ||| | | || ||||| || || || | |||| ||| || Sbjct 41741 ACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAGCCAGGCCG 41684 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || || || || |||||||| | | ||| || || | | | || || ||||| ||| Sbjct 41683 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAG 41624 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 ||||| || ||||| ||||||| || || || || | | |||||| || || Sbjct 41623 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGG 41564 Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 |||||| | ||| || || || | | ||| | ||||| || || ||||| || || Sbjct 41563 TTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCA 41504 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | |||| ||||| || || || ||||| || | |||||||||||||| || | || Sbjct 41503 AATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACA 41444 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 | | ||| ||||| |||||||| ||||| || || || || | ||||||| || Sbjct 41443 CGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTA 41384 Query 76853 GCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAG 76912 ||||| || | | ||| || || || ||||| || ||||| | |||||| Sbjct 41383 GCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAG 41324 Query 76913 CGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAG 76972 || | ||||| ||||| || || || || || ||| |||||| | || ||||| Sbjct 41323 GTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAA 41264 Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||| ||| || || || || || || | |||||| || || || ||||| Sbjct 41263 GAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 41204 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 || || | || | ||| ||||| | ||| || || | | ||| Sbjct 41203 AGCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTCAATGTTGTCTCCCCAAATA 41144 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 || || || || ||||| | ||| ||||||||||| || || |||| || | ||| Sbjct 41143 CCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTG 41084 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 | | |||||| | |||| ||| || || ||||| || | || |||||||| ||| Sbjct 41083 AGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCG 41024 Query 77213 TAAATAAT 77220 || | ||| Sbjct 41023 TAGACAAT 41016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712900811878080