Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2339 131 4e-25 seq2753 87.8 4e-12 >seq2339 Length=71557 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| ||||||||||| || || || ||||| |||| ||||||| ||||| Sbjct 18496 AGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCC 18555 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||| |||||||| | ||| ||||| | | || |||||||| ||| Sbjct 18556 TCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGAATGCCTTCCTTATCT 18615 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | || ||| || ||||| | |||||||| Sbjct 18616 TGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTC 18675 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| |||||| Sbjct 18676 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 107 bits (118), Expect = 4e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| ||||||||||| || || || || ||||| |||| | ||| | Sbjct 18717 GAGGCGGAGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACG 18776 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || |||||||| | | |||||| || | | ||| ||||| Sbjct 18777 GCCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTC 18836 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | | |||| || ||| || ||||| || Sbjct 18837 CTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGT 18896 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || || || || || | |||||| || Sbjct 18897 GATGGTCTTTCCGGTCAAAGTCTTGAC 18923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGA 151971 || || ||||||||||||||| | || | || ||||| || ||||| ||||| | Sbjct 18289 TCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTT--CCGGCAA 18346 Query 151972 AGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAG 152031 | ||||| | |||||||| | | ||| || ||||| || ||||| || ||||||| Sbjct 18347 AAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACAT 18406 Query 152032 TCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCA 152091 | || | | |||| ||| || ||||| | |||||||| || || || | ||||| | Sbjct 18407 TGTCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGA 18466 Query 152092 CGAAGACCTGCAT 152104 | || | ||||| Sbjct 18467 CAAAAATTTGCAT 18479 >seq2753 Length=281039 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| ||| | || | ||||| || || || || || || Sbjct 117973 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 117914 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 |||||| | |||||||||| | || || ||||| || || || || ||||| | Sbjct 117913 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 117854 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| ||| ||| || ||||| || || || || |||||||| || || || Sbjct 117853 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGAC 117794 Query 152093 GAAGACCTGCATTTTACC 152110 ||| | |||||| || || Sbjct 117793 GAAAATCTGCATCTTGCC 117776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153765081632999