Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2753 183 6e-41 seq2339 172 1e-37 seq2517 138 2e-27 seq3515 91.5 3e-13 >seq2753 Length=281039 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||||| || || |||||||||||||| Sbjct 118009 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 117950 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | ||||| ||||| || Sbjct 117949 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGG 117890 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 117889 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 117830 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | || || ||||| |||||||| || Sbjct 117829 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 117779 >seq2339 Length=71557 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || ||||| || |||||||| || ||||||||||| || Sbjct 18252 ACCACCACGCAGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCT 18311 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || |||||||| || | ||||| ||||| || Sbjct 18312 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 18371 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | ||| || | ||||| ||||| |||| ||| || Sbjct 18372 GATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTGTCAGAAGATTCCAC 18431 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||| ||||| || || || ||||| Sbjct 18432 TTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 18479 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || |||| ||| | || || || || || |||||||| | Sbjct 18480 ACCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGA 18539 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| || || |||||||||||||| | || ||||||||| || Sbjct 18540 CAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGG 18599 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||| | ||||| ||||||| || ||||||| |||||| Sbjct 18600 AATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGAC 18659 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 18660 TTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | || || || || ||||||||||||| Sbjct 19012 ACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGA 19071 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || || ||||| | ||| || |||||| ||| Sbjct 19072 AAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGG 19131 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | || || | || |||||||| || | ||||| Sbjct 19132 GATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGAC 19191 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 19192 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || ||| || || || |||||||| | Sbjct 18708 ACCACCACGGAGGCGGAGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGA 18767 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || || || |||||||| || || || ||| || Sbjct 18768 GAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGG 18827 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||| || ||||| | || || | ||||| ||||| || | ||||| Sbjct 18828 GATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 18887 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| ||||| || ||||||||||| || Sbjct 18888 CTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 18923 >seq2517 Length=100120 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| | || || || || ||||| || || || || || |||||| Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 66450 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| ||||| ||||||||||||||||| || | || || | ||| Sbjct 66449 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 66390 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || ||||| ||||| ||||||| |||||| ||||| Sbjct 66389 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 66331 >seq3515 Length=139295 Score = 91.5 bits (100), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTG--CGACGCTATTCCTTGCCGTCT 230224 |||| || | |||| | ||| | ||||| |||| ||| ||| | || || ||| Sbjct 85200 TCACCGACGCTGTTGGCATTGAGCAAGAGTT--TTTGACCGAGGCTCTGCCGTGTGCTCT 85257 Query 230225 TATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTT 230284 | |||||||| || || ||| ||||||||| ||||| || || ||||| | || Sbjct 85258 CCTAGGCATGAACGCCACACTGATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATT 85317 Query 230285 CGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCT 230344 || || || || |||| || ||||| || || |||||||||| ||| |||||| Sbjct 85318 GGTTGCTCTTGGTAACGAAAAGGTGTACAAAACCGCCAACCCCTTCGATTTCATGGAGAA 85377 Query 230345 CATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 |||||| | || || || ||||||||||| || || || | || ||||| ||||| Sbjct 85378 CATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAACGAGTTGGAGAATATCAGAAGGC 85437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046688652636926