Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq13 105 1e-17 seq233 84.2 5e-11 >seq13 Length=282089 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||||| ||| ||| || || || ||||| || ||||| ||| | || ||| Sbjct 97179 GGCATGAACGCCACACTGATGAAGCAATATATTGAATTTGTCGCCGATCGCTTATTGGTT 97238 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || |||||| |||| || || ||||| | |||||||| | || |||||| |||| Sbjct 97239 GCTCTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATT 97298 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || | || ||||| ||||||||||| ||||| || | || ||||||| | |||| Sbjct 97299 TCCTTGGGTGGCAAGACGAACTTCTTCGAGAAGCGAGTTGGAGAATATCAGAAGGCTGGA 97358 Query 230632 GTGATG 230637 || ||| Sbjct 97359 GTTATG 97364 >seq233 Length=46100 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| |||||| ||||| |||||||||| |||||||| || ||| | ||||| || Sbjct 22678 GTCGTCACCGTTTGCATATCGCCATTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCAT 22619 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| | ||| | | ||| ||||| | |||| | | |||| || ||||||||| Sbjct 22618 CTCCACGTGCTCAAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTC 22559 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || | || |||||| ||| || ||||||| ||| ||||||||| || || Sbjct 22558 GACTTTGCCTGTGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCC 22499 Query 319176 CGCACCGTT 319184 ||||||||| Sbjct 22498 CGCACCGTT 22490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809525000840