Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq13 120 3e-22 >seq13 Length=282089 Score = 120 bits (132), Expect = 3e-22 Identities = 195/280 (70%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 |||| ||||| | | ||| |||| ||||| || ||||| || ||||| ||||||| Sbjct 96726 TATCGATCAGGAGAGAGTATGTTTCAGAGTGGATATTCTCCATCATGATCTGGAATCCAT 96667 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 ||||||| |||||||||| | || || || || || || || || ||| |||| Sbjct 96666 AGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCAT 96607 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || || |||||| |||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 96606 TGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTTCTCGT 96547 Query 16659 CAGATGTAAGA---ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 | | ||| | | |||||| | || || ||||| | ||| | ||||| | || Sbjct 96546 CGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCTATCTCTTCGGCCG 96487 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| || || | ||||| || ||||||| |||||| Sbjct 96486 TCCAGAAAGAGGCTTCGGCCTTCTTGTACATTTGCCAAAT 96447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511407572617760