Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq61 116 4e-21 >seq61 Length=132938 Score = 116 bits (128), Expect = 4e-21 Identities = 247/365 (68%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 || ||||||||| ||| | | ||||||||||||| ||||||| | | || ||| Sbjct 112112 CGACACGTAGAATTGGGCAAATACATGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCCG 112171 Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 | |||||| || | | || || || || | | || || ||||||||| | || Sbjct 112172 TGCGTTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCGAT 112231 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045 || ||| ||||||||| | |||| || ||| || ||||||| || || ||| | Sbjct 112232 CACGTCGGCGAGCTGGTCGATTCCCTTGCCGGTGTAGTCCGTCTTGGCATCGACATACTC 112291 Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTG 146105 || || ||||||| ||| ||||| ||||| ||||| || || || ||| || | ||| Sbjct 112292 TGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCGAGATCGCCGACTTCACGGTG 112351 Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || || | ||||||| || || || || ||| ||||||| || |||||||| Sbjct 112352 TGTGAGACCCAGATTGTCGAGGAACTCGCGTGATCCATTGCCGTCCCAAATTTTGACGCC 112411 Query 146166 --CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 | | || ||| || || | ||| ||| ||| ||||||||| || || || || Sbjct 112412 GGCGTTGCTGAGGGC-CAGT-GAGGAGGTGTTGCCCTCGATGAACCATAGTAGTTCGGCG 112469 Query 146224 AGGAC 146228 | ||| Sbjct 112470 ATGAC 112474 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGT 145762 ||| ||||||||||| |||| ||||||| ||| | | || ||| | | | | | | Sbjct 111869 GTACACGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-T 111927 Query 145763 GGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCA 145822 | || | ||||| || || || | |||||| || |||||||||||||| ||||| |||| Sbjct 111928 GTGCAATCATGTGTGTGAGGAGTGCGTAGCTAGCAATGTTGAAGGGCACGCCCAGGCCCA 111987 Query 145823 TGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 |||| | || || ||||||| || ||| Sbjct 111988 TGTCGCATGATCGTTGGTACAATTGACAG 112016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590068922474720