Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq32 158 1e-33 seq13 132 5e-26 seq175 123 3e-23 seq199 116 4e-21 >seq32 Length=184707 Score = 158 bits (174), Expect = 1e-33 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || |||||| | || || || | Sbjct 81110 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 81169 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 81170 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 81228 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||||||| |||| || || || ||||| || || | |||||||| | |||||| Sbjct 81229 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 81288 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||||||||||||||| ||| ||||| | ||| ||||| || | || || || Sbjct 81289 CAACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGTGG 81342 >seq13 Length=282089 Score = 132 bits (146), Expect = 5e-26 Identities = 230/329 (70%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| | ||||| ||||||| ||||| ||||| |||||| ||||||| || || Sbjct 96899 CTTCGCCCAGCGCTTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTT 96958 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 ||| | ||||| ||||||||||| || || || ||||||||||| || ||| || || Sbjct 96959 TGCCTCGATATTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGA 97018 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 || ||||| | || |||||| |||| |||||||| ||| || || | |||| | Sbjct 97019 ACTTATCTCTCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCT 97078 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 ||| ||| | ||| | || ||| ||| |||||||||| || | || || Sbjct 97079 TAAGCACCGAGCCAGCAAGAAAATTATCCAGGATATCATCACCGACGCTGTTGGGATTGA 97138 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC-G 117325 ||| || | ||||| || |||||| |||| ||| || || | || || | || | Sbjct 97139 GCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAA-CGCCACACTG 97196 Query 117326 ATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||| |||||| || || || |||||||| Sbjct 97197 ATGAAGCAATATATTGAATTTGTCGCCGA 97225 Score = 131 bits (144), Expect = 2e-25 Identities = 196/278 (71%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||| || || |||||||| | ||| ||| | || ||| Sbjct 96447 ATTTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATAGATCTG 96506 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||| ||| | || ||| |||| ||||| | |||||| Sbjct 96507 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 96566 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || || || || |||||||| ||||| || || || | |||||| Sbjct 96567 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGCGT 96626 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| | ||||| || |||||||| || || |||||| ||| Sbjct 96627 TTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGATG 96686 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGA 116910 ||||| | ||||| |||| || || ||| ||||| Sbjct 96687 GAGAATATCCACTCTGAAACATACTCTCTCCTGATCGA 96724 >seq175 Length=62467 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | | Sbjct 37875 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATT 37816 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | || | ||||| ||||| | ||||| |||||||| ||| | |||||||| ||| | Sbjct 37815 GACAATG-TCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 37757 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || |||| || ||||| |||||||||||| ||||| Sbjct 37756 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 37697 Query 40878 GG 40879 || Sbjct 37696 GG 37695 >seq199 Length=55906 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||| || |||| ||||| || | Sbjct 33363 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCCTCT 33304 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 33303 GACACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCGCCCGACCAG 33244 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || || | ||||| || |||||||| Sbjct 33243 CAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAAT 33184 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 33183 ATCCAGAAGGAGTCAACACTACACCTCGT 33155 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||||||||| | |||||||||||||| || | || || || Sbjct 32522 AAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGACTTATTTTTGCCGGAAAG 32463 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| |||| ||||| || | ||||||||||||||||||||| ||| ||||| Sbjct 32462 CAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAAAGCACTTTGCAT 32403 Query 40894 CTAGTG 40899 || ||| Sbjct 32402 CTCGTG 32397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212321823680