Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq199 123 2e-23 seq32 123 2e-23 seq175 107 2e-18 >seq199 Length=55906 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| || || || ||||| || | |||||| |||||||||||| Sbjct 33160 GTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTG 33219 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| ||||||||||| ||||| || || ||||||||||| ||| || Sbjct 33220 CTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGAATCTT 33279 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||||| | | ||||||||||| || | || |||||||| Sbjct 33280 CGACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 33339 Query 118715 CAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || || || ||||||| Sbjct 33340 GAGGGTCTTGACGAAGATTTGCATGG 33365 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| || ||||| ||||| ||| || ||| || ||||||| Sbjct 32626 ACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCG 32685 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| |||||||| || || || ||||| ||||| ||| | Sbjct 32686 AGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGA 32745 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| ||||| || | || | |||||| Sbjct 32746 ATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTGATAGTTTTG 32805 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || || |||||||| Sbjct 32806 CCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || ||||| ||||| ||| | || || ||| || ||||| || ||| Sbjct 32866 GTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 32925 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||||||||||| ||||| || || |||||||| ||| || || Sbjct 32926 GCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTTG 32985 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||| | ||| | || || ||||||| ||| Sbjct 32986 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 33045 Query 118722 TTTACAA 118728 || |||| Sbjct 33046 TTGACAA 33052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 || || || |||||||| ||||||| ||||| || || ||||| ||||| || | Sbjct 32416 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 32475 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || || || ||||| |||||||| |||||||||||||| ||| || ||| || | Sbjct 32476 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTG 32535 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 |||| ||| || | || || || | || | || || || |||| || || ||| Sbjct 32536 TCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTCTTTCCAGTCAAGGTCTTGACA 32595 Query 118728 AAAATCTGCAT 118738 ||||| ||||| Sbjct 32596 AAAATTTGCAT 32606 >seq32 Length=184707 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||| || || |||||||| ||||||| ||||| ||| Sbjct 81325 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 81266 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| |||| || || ||||| || || || |||||||||||||| Sbjct 81265 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 81206 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | ||| Sbjct 81205 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 81146 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||||||||| Sbjct 81145 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 81113 >seq175 Length=62467 Score = 107 bits (118), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || ||||| ||||| || |||||| |||| Sbjct 37697 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 37756 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || ||||||||||||||| ||||| || || | || Sbjct 37757 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCA 37816 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || ||||| |||||||| || || ||| Sbjct 37817 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 37876 Query 118731 ATCTGCATGGCTTATT 118746 ||| |||| |||| Sbjct 37877 --CTGGATGGTGTATT 37890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824753155056