Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq199 118 1e-21 seq32 118 1e-21 seq175 102 9e-17 >seq199 Length=55906 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| |||| ||||| || | || || |||||||| |||||||| Sbjct 33172 CTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAA 33231 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| ||| | | |||||||||| ||| | || | |||| Sbjct 33232 GATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCC-TGAATCTTCGACTTGACAT 33290 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || |||| || ||||| ||||| || || ||||| | Sbjct 33291 TGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 33350 Query 43171 CAAAGATTTGCATTTTTAC 43189 | ||||||||||| |||| Sbjct 33351 CGAAGATTTGCATGGTTAC 33369 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| ||||||||||| || |||||| ||||||||||| || | | Sbjct 32608 CCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 32667 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| || || || ||||||||||||||||| | || Sbjct 32668 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 32727 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||| | | ||| | || | || | | | | ||| || ||||| || Sbjct 32728 ATGCCTTCCTTAT-CTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGAC 32786 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| |||||||| || | ||||| || ||||| ||||| Sbjct 32787 TTCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 >seq32 Length=184707 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || ||| || || | Sbjct 81327 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 81268 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || ||||| |||||||| | || | || ||||||| Sbjct 81267 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 81208 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 81207 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 81149 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || || || ||||| || Sbjct 81148 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 81110 >seq175 Length=62467 Score = 102 bits (112), Expect = 9e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| || | ||| || || |||| || |||||||| |||||||| | Sbjct 37695 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 37754 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 37755 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 37814 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 37815 CAATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 37874 Query 43174 A 43174 | Sbjct 37875 A 37875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571809966235040