Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq64 118 2e-21 >seq64 Length=130623 Score = 118 bits (130), Expect = 2e-21 Identities = 427/665 (64%), Gaps = 15/665 (2%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||||| || ||| || | || | | ||||| || || || Sbjct 42798 CTTGACTCCGCCATTGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTTAAGACT 42857 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || |||| ||| ||||| |||||| | | ||||||||||| || ||| |||||||||| Sbjct 42858 CTAGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTCGAGCGACCTCAGCACATG 42917 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 ||||| || || ||||| ||| || |||| ||| |||| | ||||| ||| Sbjct 42918 ACTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTTTTGGAGACCTAC 42977 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | | || | || || ||| |||| || ||||||||||||||| Sbjct 42978 CACCTCATGTCCAGCAAGCTCT---TCACCCACGCCTCACCTACACTCTTCAACGCCGGT 43034 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 ||| | | ||||||| || || ||||| | | |||| | || ||| | ||| Sbjct 43035 ACCCCCCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGACATGAAGGATGACAGCATTGAC 43094 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || ||||| || | |||| || | ||| || || | || || || ||| Sbjct 43095 GGTATCTACGACACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATC 43151 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || | |||| | |||||| || | || || ||||| || || ||||| Sbjct 43152 GGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAATGGTACA 43211 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | || ||| | ||| | ||||| ||| | ||| ||||| | | | ||||| Sbjct 43212 TCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTGACCAG 43271 Query 249256 GCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | ||| | ||| || | || ||||| || | || |||||||| || | Sbjct 43272 GGCGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTG 43331 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || || || || ||| ||||||| | ||||| || | | || || || ||| Sbjct 43332 TTTGACTTTCTTGATTTGCGAAAGAACCATGGCAAGGAAGAAAACCGTGCTCGCGATCTC 43391 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||| | |||||| || | || | |||||| |||||| | | || |||||| Sbjct 43392 TTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAATGGAGATTGG 43451 Query 249433 ACGCT 249437 || || Sbjct 43452 ACTCT 43456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073751706849024