Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq32 120 2e-22 seq199 114 1e-20 seq175 102 6e-17 >seq32 Length=184707 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| |||||||||||||| |||||||||||| |||| ||| | || || Sbjct 81321 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 81262 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || || ||||| || || | |||||||||||| Sbjct 81261 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 81202 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 81201 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 81142 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || || || || || || ||||| |||||| Sbjct 81141 CCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 81106 >seq199 Length=55906 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||||| |||||||| |||||||||||| |||| ||| |||| ||||| || Sbjct 32404 TGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGC 32463 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 |||||||| || || | || || ||||||||||| | |||||||||||| ||| || Sbjct 32464 TTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTG 32523 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || || | | | | || | ||||| |||| ||||| ||||| || ||| Sbjct 32524 GATTTGACATTGTCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTCTTTCCAGTC 32583 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 | ||||| ||||| |||||||| Sbjct 32584 AAGGTCTTGACAAAAATTTGCAT 32606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||||| ||||||||| || || | || ||||| || Sbjct 32859 GTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTG 32918 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||| ||||| || || ||||| | ||| ||||||||| ||| || Sbjct 32919 CTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTT 32978 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| ||| ||||| | ||| || ||||| || || Sbjct 32979 CGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGT 33038 Query 45313 CAGAGTCTTCACAA 45326 || |||||| |||| Sbjct 33039 CAAAGTCTTGACAA 33052 >seq175 Length=62467 Score = 102 bits (112), Expect = 6e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||||||||||||||||||| ||| ||| |||| || || || || || ||||| | Sbjct 37695 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 37754 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| ||||| ||||| || || | ||||||||||| ||||| ||| || Sbjct 37755 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 37814 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||| ||| ||||| | ||| || |||||||||||||||||||| || | Sbjct 37815 CAATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 37874 Query 45327 A 45327 | Sbjct 37875 A 37875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070057602428