Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq64 336 2e-87 seq199 104 2e-17 seq175 86.0 6e-12 >seq64 Length=130623 Score = 336 bits (372), Expect = 2e-87 Identities = 600/873 (69%), Gaps = 2/873 (0%) Strand=Plus/Minus Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || || |||| || |||||||||| |||| ||||| | ||||||||| ||||| | Sbjct 43675 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 43616 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || ||||||| ||| ||| ||||||| ||| | ||| | |||| || ||| | Sbjct 43615 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 43556 Query 23222 CGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280 ||| || | | ||| || ||| ||||| | ||| | || ||||| || | || Sbjct 43555 -GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCC 43497 Query 23281 GTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT 23340 || || || |||||||| || | | | |||||||||||| |||| | | || Sbjct 43496 ATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTT 43437 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| ||||| |||| || ||||| || ||||| ||||| ||| || ||||| || || Sbjct 43436 TTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACG 43377 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||||| ||||||| |||||| | |||||| |||||||| || ||||| Sbjct 43376 GTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCA 43317 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||||||||| | |||||| || || |||| ||| ||||||||||| || ||||| | Sbjct 43316 AGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCT 43257 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| | || | ||||| || | || |||||||| | || ||| Sbjct 43256 GGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCC 43197 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | || || | || || | | ||| |||| || || || || || || Sbjct 43196 GGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCAT 43137 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || || |||||||||||||| || || |||||||| || || Sbjct 43136 CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTT 43077 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||| | ||||| ||||||| || || ||| ||| |||| ||| ||||| Sbjct 43076 CATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGT 43017 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || |||||| || ||| | ||||| || | ||| || || | || || Sbjct 43016 AGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTC 42957 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||||| ||||| ||||||| || |||||||| |||||| ||||||| |||||| Sbjct 42956 AATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGAC 42897 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | |||||| | ||||| |||||||| | | | || ||||| ||||| || | Sbjct 42896 GATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAAGCCAAAGTATTG 42837 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 |||||| ||||| | |||| || ||||| || Sbjct 42836 ATAGTTGAAGTCTCTGTCGTAGACAATGGCGGA 42804 Score = 181 bits (200), Expect = 9e-41 Identities = 365/533 (68%), Gaps = 15/533 (3%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| | || |||||||||||||| ||||||| |||||| | ||| || || || Sbjct 44632 GTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAG 44573 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | ||||| || |||| |||||| ||| |||||| Sbjct 44572 GTGATCTTGCCCATAGTAGGATCCTTCATGTGGACGTTGAGCGACTGGGACTGGTCGATA 44513 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGT 22323 || || || |||||||||||||| | || | ||| |||| || || ||||| ||||| Sbjct 44512 AAGGCACCGCGATCGGCGGCCATCTGGATAACATG-ACGCTGAGAAATCTCCCAAACGGT 44454 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTA 22381 |||||| || | |||| || ||||| ||| | || |||| | ||| ||||| Sbjct 44453 CTTGTAGAGAGCCTTGATGTCGGCGGGTAT--ATTGGGGATGTTCTGAATGGAACCGTTC 44396 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | ||| ||| | ||| || || | ||| ||| Sbjct 44395 TCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATATCGACGAGATCCTTG 44336 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || || || || | |||||| ||||| |||||||||||| Sbjct 44335 AGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTG 44276 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || || | |||||||| ||||| || || | ||| || ||||| ||| Sbjct 44275 GACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGC 44216 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGC 22618 || || || | ||| | |||||| | | ||||||| |||| | | || ||| || Sbjct 44215 ATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGA---TCTGCTCCTTCAGA 44159 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 | ||| ||||||| || || ||| | ||||| |||||| ||| |||| Sbjct 44158 TTGTCCCACTCCCACAACTCAGAAGGCTTGACATT---CCACATGTCGAATTG 44109 >seq199 Length=55906 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 31181 ATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 || ||| || ||||||||| ||||| ||||| || || ||||| || || || |||| Sbjct 33375 ATCGAAGTAACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAG 33316 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 || || | || |||| | | || | ||||| || || ||||||||| || | Sbjct 33315 GTCGAGTCCTCTGACACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATC 33256 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||||||||||||||| |||||||| || ||| | || || Sbjct 33255 CCGCCCGACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGA 33209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || || || | || || ||| | || Sbjct 32606 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACTTTGGAAGTGGAATCTTCT 32547 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||||||||| ||| | || ||||||||| Sbjct 32546 GATACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 32487 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||| |||||||| || ||||||| || ||| Sbjct 32486 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 32427 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||| ||| | ||||| || ||| | ||| | || ||| Sbjct 32426 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGGT 32379 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || |||||| |||| || || || |||||| | || || || | ||||||| |||| Sbjct 33050 GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 32991 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| || || |||||||||||| | || || || |||||||| | || Sbjct 32990 AATGTCAAGTCGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGCGATTGATT 32931 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 |||||||| || ||| ||||||| || | ||| || || ||||| || ||| Sbjct 32930 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATTCAGAAGGAA 32871 Query 31385 TCGACTCTTCATCTGGTACT 31404 || |||||||| || || || Sbjct 32870 TCCACTCTTCACCTCGTCCT 32851 >seq175 Length=62467 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||||||||| ||||| || |||||| | || || || | || |||| | Sbjct 37876 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 37817 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 || | ||||| | ||| |||||||| ||| | || || ||||||||||| | Sbjct 37816 TGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 37757 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||||||||| ||| | || ||| | || || ||| || |||||||| || Sbjct 37756 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 37697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760449018560