Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq13 118 2e-21 seq64 89.7 1e-12 >seq13 Length=282089 Score = 118 bits (130), Expect = 2e-21 Identities = 295/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 101916 TTGTTGCCTTT-GCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| || |||| ||||| || || || |||||||| || ||||| || || || || ||| Sbjct 96912 TTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATATTC 96971 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| ||||||| | ||| | |||| || ||||||| ||| ||||| | || ||| | Sbjct 96972 TGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGAACTTATCTCTCGT 97031 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 || || ||| | || ||||||||||| |||||| | | | | | ||| Sbjct 97032 GATGAGGGTTTGCACACAGACTTTGCATG---TCTGTTGCACTCGCATCT--TAAGCACC 97086 Query 102095 ---CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| ||||| ||| || | || || |||| || || || | ||||| ||||| Sbjct 97087 GAGCCAGCAAGA-AAATTATCCAGGATATCATCACCGACGCTGTTGGGATTGAGCAAGAG 97145 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 ||| | || | | ||||| | | | || |||||| || |||||| || Sbjct 97146 TTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTGATGAAGCAA 97205 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 || ||||||||||| || ||| ||||||||| | || |||||| || || Sbjct 97206 TATATTGAATTTGTCGCCGATCGCTTATTGGTTGCTCTTGGTAACGAAAAGGTATACAAA 97265 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 ||||||||||| |||||||| || |||||| | | ||||| ||||| || Sbjct 97266 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACGAACTTCTTC 97325 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||| |||| | || ||||| Sbjct 97326 GAGAAGCGAGTTGGAGAATATCA 97348 >seq64 Length=130623 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| |||||||| | |||| |||||| ||||||| | || | || Sbjct 43541 GCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAG 43482 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT---CACTCTCTC 94514 |||||||||||||| ||| ||||| || | |||| ||| ||| ||| || | || Sbjct 43481 GCCAGGGCACTCGTTGGGACACATGAGAGTCCAA-TCT--CCATTCTTTTCGACGCGCTT 43425 Query 94515 CATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 |||||||||||| | | ||| | ||| |||| ||||| Sbjct 43424 CATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATC 43386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989570458779940