Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15]
1,068 sequences; 36,169,561 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq64 132 6e-26
>seq64
Length=130623
Score = 132 bits (146), Expect = 6e-26
Identities = 454/703 (65%), Gaps = 10/703 (1%)
Strand=Plus/Minus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
||||| || || | |||||||| | | ||| ||||| | | | || || |||||
Sbjct 43480 CCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATG 43421
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
|||||||| || ||||| ||||| | || | ||| | | | | ||| || || ||
Sbjct 43420 AAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCA 43361
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
|||||| | ||| || || | | | || ||||| || || | ||| |||
Sbjct 43360 TGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATG 43301
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | ||||| || ||||| || ||||| || | |||||| || ||||| || |
Sbjct 43300 GCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAG 43241
Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311
|| | | ||| ||||| || || ||||||||||||||||| |||| || || ||
Sbjct 43240 ACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAGAGCCG 43181
Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369
| ||||| || | || | || || || || || ||||| || ||||| | |
Sbjct 43180 GTAGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 43123
Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429
| || || | || || ||||| || || || || |||||| |||||| | |||||
Sbjct 43122 CACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTAGAA 43063
Query 66430 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486
|||| ||||| | |||| | || || || || || | ||||| || ||||
Sbjct 43062 AACAAGAAGACA---GCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGT 43006
Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546
| || || || || | || | ||| ||||| | | | || || | |
Sbjct 43005 GGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTC 42946
Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606
||| || || || || ||||| |||||||||||||| || ||||||||| ||
Sbjct 42945 CCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATCTTGCCGT 42886
Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666
| | ||| | | || ||| | || | ||| ||||| ||||| || | || ||||
Sbjct 42885 TGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAAGCCAAAGTATTGATAGTTGAAGT 42826
Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709
||| ||||| | ||| | |||| || | ||||| | |||
Sbjct 42825 CTCTGTCGTAGACAATGGCGGAGTCAAGCTCCTCCTTGTGTTT 42783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658164013393120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |