Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq64 132 6e-26 >seq64 Length=130623 Score = 132 bits (146), Expect = 6e-26 Identities = 454/703 (65%), Gaps = 10/703 (1%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | |||||||| | | ||| ||||| | | | || || ||||| Sbjct 43480 CCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATG 43421 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 |||||||| || ||||| ||||| | || | ||| | | | | ||| || || || Sbjct 43420 AAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCA 43361 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 |||||| | ||| || || | | | || ||||| || || | ||| ||| Sbjct 43360 TGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATG 43301 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || ||||| || | |||||| || ||||| || | Sbjct 43300 GCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAG 43241 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | | ||| ||||| || || ||||||||||||||||| |||| || || || Sbjct 43240 ACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAGAGCCG 43181 Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | ||||| || | || | || || || || || ||||| || ||||| | | Sbjct 43180 GTAGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 43123 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | || || | || || ||||| || || || || |||||| |||||| | ||||| Sbjct 43122 CACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTAGAA 43063 Query 66430 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 |||| ||||| | |||| | || || || || || | ||||| || |||| Sbjct 43062 AACAAGAAGACA---GCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGT 43006 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | || || || || | || | ||| ||||| | | | || || | | Sbjct 43005 GGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTC 42946 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 ||| || || || || ||||| |||||||||||||| || ||||||||| || Sbjct 42945 CCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATCTTGCCGT 42886 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | | ||| | | || ||| | || | ||| ||||| ||||| || | || |||| Sbjct 42885 TGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAAGCCAAAGTATTGATAGTTGAAGT 42826 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 ||| ||||| | ||| | |||| || | ||||| | ||| Sbjct 42825 CTCTGTCGTAGACAATGGCGGAGTCAAGCTCCTCCTTGTGTTT 42783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164013393120