Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq64 174 2e-38 >seq64 Length=130623 Score = 174 bits (192), Expect = 2e-38 Identities = 994/1566 (63%), Gaps = 50/1566 (3%) Strand=Plus/Minus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || || || || || ||||| |||| ||| || | || |||||| || || ||| Sbjct 44326 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 44267 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | | ||||| || |||| |||||| | || || || || ||||| || || Sbjct 44266 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCG 44207 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAAT 79228 | || || || | || ||||| | || |||| | || || ||| ||||| | Sbjct 44206 AGCAGCAACGAGTTGCGAATACCGT--GCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 44149 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CG 79287 |||| | ||||| || |||||||| | || |||| |||||||| || | || || Sbjct 44148 CCCACAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACC-TTCCGAGGCG 44090 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || || | || || || |||| || || ||| | ||| | || Sbjct 44089 GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC 44030 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA 79407 | || ||| || ||||| ||||| |||| ||| ||||| || | || || | Sbjct 44029 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGAC 43970 Query 79408 TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || || || | |||| || ||| ||||| || | || |||||||||| |||||| Sbjct 43969 TCGAAGGGC-ATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGAT 43911 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTA 79525 |||| ||||| | | || | || | ||| || ||| || |||| || | ||| | Sbjct 43910 GGGTCGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 43852 Query 79526 TAATTTTATTGAGATTCCTGACTATTACTT---TGACCACATCCTTTAGTTTGAGAAAAT 79582 | || || ||||| || | ||| | |||| ||||| || | || || | || | Sbjct 43851 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACC---TCGTGGAGCTTCTGGAAGT 43795 Query 79583 CAAATCGTCCATCTATT------ACAAA--CATGTTCAACGCGACAGATGCCAGATTACA 79634 | | || || ||| | || || || | | || | ||| |||| || || Sbjct 43794 CGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGA--AGGGCAAGAGAGGCCAAGTTGCA 43737 Query 79635 AACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTT 79694 ||| || ||||||| || | || | || || || ||||| ||||| | Sbjct 43736 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 43677 Query 79695 AATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 79754 ||||||||| | || | || || |||||| |||| || |||||||| || || || || Sbjct 43676 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 43617 Query 79755 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 79814 || | || ||||| |||| || || | || | | ||||| | || | | | Sbjct 43616 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA- 43559 Query 79815 TATAGACTTGTATCTCTTT---TCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCG 79869 |||| |||| | || | || || || | ||| | | | || ||||| Sbjct 43558 -ATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCC 43502 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 || || | ||| | | ||||| || |||| |||||||| | | ||| |||||| Sbjct 43501 TCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCA 43442 Query 79930 TCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 | || ||| || || ||||| |||||||| || ||||| ||||| | || ||||| | Sbjct 43441 T--TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGC 43384 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 | | | || || || || |||||| | ||| || || | | | || | Sbjct 43383 GAGCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTG 43324 Query 80048 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTA 80107 ||||| || || | ||| ||||| | | || ||||| ||||| || ||||| || | Sbjct 43323 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAA 43264 Query 80108 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 80167 |||||| || ||||| || | || | | ||| ||||| || || ||||||||||||| Sbjct 43263 CGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCAT 43204 Query 80168 TGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCC 80225 |||| |||| || || || | ||||| || | || | || || || || Sbjct 43203 TGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATACC 43146 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285 || ||||| || ||||| | || || || | || || ||||| || || ||||| Sbjct 43145 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCT 43086 Query 80286 ATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGC 80342 ||||| |||||| | ||||||||| ||||| | |||| | || || || Sbjct 43085 GTCATCCTTCATGTCGACTAGAAAACAAGAAGACA---GCTGACATTGGGGGGTACCGGC 43029 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 || || | ||||| || ||||| || || || |||| || | ||| ||||| Sbjct 43028 GTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTC 42969 Query 80403 AATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462 | | | || || | | ||| || ||||| || ||||| ||||||||| Sbjct 42968 CAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTG 42909 Query 80463 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAA 80522 ||||| || ||||||||| || | ||| | | || ||| | || | ||| ||||| Sbjct 42908 AGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAA 42849 Query 80523 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||||| || | || ||||||| ||||| | ||| | |||| || | ||||| Sbjct 42848 GCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGCGGAGTCAAGCTCCTCCTT 42789 Query 80583 ATATTT 80588 | ||| Sbjct 42788 GTGTTT 42783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718259211111520