Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 >seq13 Length=282089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 179/261 (69%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--A 14015 |||||||||| || || || || ||||| || ||||| || || | ||| || | | Sbjct 96705 TTTCAGAGTGGATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 96646 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || ||||| | || | || |||||||||||| ||||| || ||| ||| Sbjct 96645 CC--TGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCATTGACAATGCCGTCAGAAGC 96588 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTT 14132 ||||| |||||||| |||| | || ||||||| ||| || | | | | | || || Sbjct 96587 AGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTTCTCGTCGTCGCTCAGACGGTTGTT 96528 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||||||| || ||||| || ||||||| || || | ||||| ||| || | || Sbjct 96527 CCAATCGTGCAAGTCCTTGGACAGATCTATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGC 96468 Query 14193 TTTTTTATACATTACCCATAT 14213 || || |||||| ||| || Sbjct 96467 CTTCTTGTACATTTGCCAAAT 96447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478582410839520