Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq199 82.4 6e-11 >seq199 Length=55906 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| ||||| | ||||| | || |||| || || || || ||| Sbjct 32872 TCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAA 32931 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||||||| ||||| | || | |||||| || || ||| ||| | ||||| | Sbjct 32932 ATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTC-CTGAATCTTCGACTTGACATT 32990 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | |||||| || | || || || |||||||| | ||| || || Sbjct 32991 GTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 33050 Query 43098 AA 43099 || Sbjct 33051 AA 33052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381364635997944