Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq64 156 6e-33 seq13 150 3e-31 seq148 89.7 8e-13 >seq64 Length=130623 Score = 156 bits (172), Expect = 6e-33 Identities = 312/457 (68%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| ||||||||||| || || || || || | ||| ||||| | || |||| Sbjct 43258 GATACGTTGACCAGGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTT 43317 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| ||||||||| | || |||| || ||| |||| ||||| | Sbjct 43318 GGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCATGGCAAGGAAGAAAACC 43377 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | || | || ||| || ||| | |||||| | ||||||||||||||| | Sbjct 43378 GTGCTCGCGATCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAA 43437 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| | |||| || ||||| ||| || || || || ||| | ||||||| | Sbjct 43438 AGAATGGAGATTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATG 43497 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGA 97163 |||| ||||||||||| ||| | || |||| |||||||| || |||| | Sbjct 43498 GCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCAAGACTA 43557 Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| ||| | |||| || ||| | ||||| | | | ||| || || || | || Sbjct 43558 TTCG-TGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAACCC 43615 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | || || ||||||||| || || | || |||||||| || |||| ||||| Sbjct 43616 CTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCAT 43675 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| ||||||||||| || | |||||| Sbjct 43676 TCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 43712 >seq13 Length=282089 Score = 150 bits (166), Expect = 3e-31 Identities = 210/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| | ||||| || ||||||| ||||||| | |||||| Sbjct 96447 ATTTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATAGATCTG 96506 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||||||| | | ||| ||| || ||| | | || || || Sbjct 96507 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 96566 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||||||||||| |||||||| | || || || || ||||| || || || |||| || Sbjct 96567 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGA-GCG 96625 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || |||||||| ||||||| Sbjct 96626 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGTTGCTTCTATGGATTCCAGATCATGA 96684 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | ||||| | ||||| |||| |||||| ||||| || | ||||| Sbjct 96685 TGGAGAATATCCACTCTGAAACATACTCTCTCCTGATCGATAGCTACAT 96733 Score = 111 bits (122), Expect = 2e-19 Identities = 336/507 (66%), Gaps = 33/507 (7%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TAC 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | | Sbjct 96846 ATCCGGAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTC 96902 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| ||||| |||||||||||||| ||| ||||| Sbjct 96903 GCCCAGCGCTTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCC 96962 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || |||||||| || || | ||| || || Sbjct 96963 TCGATATTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGAACTT 97022 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || ||||| || ||||| | ||| ||||||| ||| ||||| | ||| | Sbjct 97023 ATCTCTCGTGATGAGGGTTTGCACACAGACTTTG-CAT--GTCTGTTGC---ACT---CG 97073 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTG 125654 | || || | || ||||| | ||||| | ||| | || | ||||| || || Sbjct 97074 CATCTTAAGCACCGAGCCAGC-AAGAAAA--TTATCCAGGATATCATCACCGACGCTGTT 97130 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTG 125713 |||| || ||||||||| | ||||| | || || || || | | ||||||||| Sbjct 97131 GGGATTGAGCAAGAGTTTTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGC 97189 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATT 125771 || || ||| | || || || ||||| || ||||| || || |||| || Sbjct 97190 CACACTGATGAAGCAATATATTGAATTTGTCGCCGATCGCTTATTG-----GTTGCTCTT 97244 Query 125772 GG---CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTA 125828 || | ||| | ||||| || || ||||| ||||||||| | ||| || | Sbjct 97245 GGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTG 97304 Query 125829 GAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || ||||| ||||| ||||||||| Sbjct 97305 GGTGGCAAGACGAACTTCTTCGAGAAG 97331 >seq148 Length=74366 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || Sbjct 34619 TCAATGTACTTGGCGACGCGCTCAAAGTCACTCTCGCCGAAACCACGGCTCGTCATGGCT 34560 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||||| | ||| |||| || | | |||||||||||| ||||| | | ||| Sbjct 34559 GGTGTACCGATACGGATACCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTTC 34500 Query 126802 TTGTTGCAAGCGAT 126815 ||||||||||| || Sbjct 34499 TTGTTGCAAGCAAT 34486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049306859680