Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq28 95.1 1e-14 >seq28 Length=195903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 5582 CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCG 5641 ||||| ||||| ||||| | || ||||||| ||| | ||| || ||| | | | | Sbjct 14819 CGCTCAATGATCAATTGCGCCACTCTGTCGCCCTCCTTGATCTCAAAGTCGGTCTCGGCA 14878 Query 5642 AAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCC 5701 |||||| |||| || || | ||||||||| |||||||| || || |||||||| Sbjct 14879 TGGTTGAAAAGCAGGACCTTGACTTGGCCGCGGTAATCGGCGTCAATGACTCCCGCGCCA 14938 Query 5702 ACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 |||||||| || ||| || || || ||||||||||| | |||||||| Sbjct 14939 GTATCGATGAAATGTTTGCTTGCGAGACCAGAGCGGGGAGCAATGCGGCCGT 14990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430048802304416