Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq32 93.3 4e-14 seq199 87.8 2e-12 >seq32 Length=184707 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || ||||||||||| || |||||||| || || Sbjct 81340 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 81282 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||| ||||||||||| | | || | || ||||| ||| | Sbjct 81281 TCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGG 81222 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || || ||||| | | || ||||| |||| |||||| Sbjct 81221 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTC 81164 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 | ||| | || || || || || ||||| ||||| || |||||||||||| || || Sbjct 81163 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 81106 >seq199 Length=55906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| ||||| ||||| || | | || | || ||||||||| Sbjct 32860 TGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGC 32919 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || |||| || ||||||||||| || | || |||||||||| ||| ||| Sbjct 32920 TTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTC 32979 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| ||||| ||| | || ||||| || ||||| Sbjct 32980 GACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTC 33039 Query 48704 AGAGTTTTCACAA 48716 | ||| || |||| Sbjct 33040 AAAGTCTTGACAA 33052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245716889068