Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 179 6e-41 seq114 159 5e-35 >seq5 Length=333266 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 152155 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 152213 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| | || | || |||| ||||||| Sbjct 152214 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCCGCCATGATCTACGAAGAGAC 152273 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| ||||||| || || |||| |||||| || ||| || || Sbjct 152274 GCGCACTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 152333 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || | ||||| || |||| ||||| || Sbjct 152334 GCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTTGTCTACGCTCTGAAGCGTCAGGG 152393 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||| ||||| || ||||| Sbjct 152394 CCGCACCCTTTACGGTTTCGGTGGTTAA 152421 >seq114 Length=93650 Score = 159 bits (176), Expect = 5e-35 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 31754 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 31696 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| |||||||| ||||||||| |||| | || | || ||||||| Sbjct 31695 TTCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATTTACGAAGAGA 31636 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| ||| ||||||| ||||| | || |||| ||||||| || || || | Sbjct 31635 CTCGCACTGTCTTGAAGACTTTCCTTGAAGGTGTCATCCGTGATGCTGTCACATACACAG 31576 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||| | ||||| ||||| || | || |||| || || | || || |||| Sbjct 31575 AACACGCCAAAAGAAAGACCGTCACGTCTCTCGACGTCGTGTACGCGCTAAAGCGACAAG 31516 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | ||||| || || Sbjct 31515 GCCGTACCCTGTATGGATTCGG 31494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074223520124