Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq199 95.1 1e-14 seq64 89.7 5e-13 >seq199 Length=55906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| ||| || || || || || ||||| | |||||| | || | || || | Sbjct 33061 ATGCAACAGTT-GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 33003 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 33002 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAG 32943 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| || || || || || ||||||| | | | || |||||| || Sbjct 32942 CAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 32883 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| ||| | || || ||||| Sbjct 32882 ATTCAGAAGGAATCCACTCTTCACCTCGTCCT 32851 >seq64 Length=130623 Score = 89.7 bits (98), Expect = 5e-13 Identities = 164/235 (70%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 148250 CTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACA 148309 ||| || || ||||| || |||| || || | |||||||||||| | || || || Sbjct 43532 CTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCA 43473 Query 148310 CTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCTCTTCATAAACAG 148366 ||||| ||| ||||| | | ||| | |||| ||||| || | |||||| || || Sbjct 43472 CTCGTTGGGACACATGAGAGTCCAAT---CTCCATTCTTTTCGACGCGCTTCATGAAGAG 43416 Query 148367 ATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGC---CTTCATATCCTCGGCACCCAT 148423 ||| || |||||| |||| | ||||||||||| || |||| | || | Sbjct 43415 ATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCATGGTT 43356 Query 148424 ATTGCGCTTTAGATCCaaaaaagt-aaaaaCGTCTGCGTGCCAAGGCTCGATGTA 148477 || ||| | || ||| ||||| ||| |||||||||||||||||||||| ||| Sbjct 43355 CTTTCGC---AAAT-CAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTA 43305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478656009856960