Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq64 376 6e-99 >seq64 Length=130623 Score = 376 bits (416), Expect = 6e-99 Identities = 1078/1633 (66%), Gaps = 40/1633 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| || || || | | ||| |||||||| Sbjct 42999 TTCACCCACGCCTCACCTACACTCTTCAACGCCGGTACCCCCCAATGTCAGCTGTCTTCT 43058 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||||| | | |||||||| || ||| || ||||||| ||||| || |||| Sbjct 43059 TGTTTTCTAGTCGACATGAAGGATGACAGCATTGACGGTATCTACGACACTCTCAAGACC 43118 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || || || | | || ||||| | ||||| Sbjct 43119 TGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCACCGCATCCGTGC 43177 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||||| |||||| || ||| || || || | ||||||||||| Sbjct 43178 TACCGG-CTCTTACATTGCCGGCACCAATGG-TACATCCAACGGCATCATTCCCATGCTT 43235 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| || |||| ||||| || ||||| |||||||| || ||||| || || Sbjct 43236 CGTGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAACAAGCGACCTGGTGCA 43295 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || ||||||||| || || || | ||||| |||||||| | || || Sbjct 43296 TTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAG 43355 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || ||||| ||| ||| || ||| | | || Sbjct 43356 AACCATGGCAAGGAAGAAAACCGTGCTCGCGATCTCTTCCTTGCTCTGTGGATCCCAGAT 43415 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATG 364022 | || ||||||||||| || || || ||||| | ||| | || || |||| || Sbjct 43416 CTCTTCATGAAGCGCGTCGA-AAAGAATGGAGATTGGACTCTCATGTGTCCCAACGAGTG 43474 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || || | ||| | || || || | || ||||| ||||| |||||||| Sbjct 43475 CCCTGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCG 43534 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||||| | || ||||| |||| || |||||||| |||| ||||| | || || Sbjct 43535 TGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGTC 43594 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| || || || | |||| |||| ||||||| ||| | |||||| | ||| ||| Sbjct 43595 CCAGACCGAAACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAA 43654 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || |||| || || |||| |||| |||||| || || ||||| ||||| ||| Sbjct 43655 CCAGAAGAACCTGGGAACCATTC-GCAGCTCCAACCTGTGCACGGAGATCATTGAGTACT 43713 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-- 364319 || || || ||| ||| || || ||| | || || | || ||||| || || || Sbjct 43714 GTGCCCCTGATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTTCCTGCCTTCGTCG 43773 Query 364320 ----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTAC 364373 ||||| || | ||| |||| | || | || || || ||| || | Sbjct 43774 ACTACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAGGTCAC---TCAAGTGGTCG 43830 Query 364374 T-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----A 364427 | | || ||| ||||| | || || || |||| || ||| || || || | Sbjct 43831 TCCGTAACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACA 43890 Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487 || || ||||| ||||| || || ||| ||||||| ||||| || || |||| ||| Sbjct 43891 GC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTT 43945 Query 364488 TATGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATC 364545 | | ||||| ||| | || || || || || || |||| || || ||| ||||| Sbjct 43946 TCT--TGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATC 44003 Query 364546 TTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGGG 364604 || || || || || || || |||| || || ||| ||| |||| | ||| || Sbjct 44004 TTCGAGACCATCTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAA-GG 44062 Query 364605 AAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG 364664 |||||||| | |||| || || ||| | || | | || || || | || Sbjct 44063 CCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTATTCTTCAATTCGACATGTG 44122 Query 364665 GAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGC 364723 |||||||| ||| |||| ||| | ||||| | || | | | | | ||| ||| Sbjct 44123 GAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAATCTGAAGGAGC-AGATCAAGGAGC 44181 Query 364724 ATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCC 364783 | |||| ||||||||| | | || ||||||||||| || || || | || || | Sbjct 44182 ACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCCACCTCGCAAATTC 44241 Query 364784 TCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTT 364843 | || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 44242 TGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGG 44301 Query 364844 CCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGT 364903 | || ||||| | ||| || || | || |||||||||| ||| || || | Sbjct 44302 CTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTCT 44361 Query 364904 GGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAG 364963 || ||| |||||||||| ||||| |||| || ||||| | |||||||| || Sbjct 44362 GGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATCCCCA 44421 Query 364964 GATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC 365023 | || | || | ||| || | ||||| ||||| ||||| ||||| ||| | Sbjct 44422 ATATACCCGCCGACATCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCATG 44481 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 | || | ||||| |||||||||||||| |||||| ||| ||||||| | ||||| Sbjct 44482 TTATCCAGATGGCCGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTCC 44541 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 ||||| | || || | |||| | || || ||||| || || ||||| | | Sbjct 44542 ACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTGG 44601 Query 365144 GTCTTAAGACAGG 365156 |||| ||||| || Sbjct 44602 GTCTCAAGACGGG 44614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303335765235176