Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq199 111 1e-19 >seq199 Length=55906 Score = 111 bits (122), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| ||| || || || || || ||||| | || ||| | || |||||| || | Sbjct 33061 ATGCAACAGTT-GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 33003 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 33002 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAG 32943 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||||| || || ||||| || ||||||| | | | | || ||| || || Sbjct 32942 CAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 32883 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || ||||| || |||| Sbjct 32882 ATTCAGAAGGAATCCACTCTTCA 32860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429930403845540