Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq64 141 1e-28 >seq64 Length=130623 Score = 141 bits (156), Expect = 1e-28 Identities = 459/708 (65%), Gaps = 10/708 (1%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | |||||||| | | ||| ||||| | | | || || | Sbjct 43485 CCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCT 43426 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| |||||||| || ||||| ||||| | || ||||| | | | | ||| || | Sbjct 43425 TCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCT 43366 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || |||||| | ||| || || | | | || | ||||| || || | || Sbjct 43365 TGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGT 43306 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | ||||| || ||||| || ||||| || | |||||| || ||||| | Sbjct 43305 AGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGT 43246 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| ||||| || || ||||||||||||||||| || | || || Sbjct 43245 TGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAG 43186 Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | ||||| || | || | || || || || || ||||| || ||||| Sbjct 43185 AGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAGAT 43128 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || | || || ||||| || || || || |||||| |||||| | Sbjct 43127 CATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGAC 43068 Query 63436 TAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 ||||||||| ||||| | |||| | || || || || || | ||||| || Sbjct 43067 TAGAAAACAAGAAGACA---GCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGA 43011 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 ||||| || || || || | || | ||| ||||| | | | || || | Sbjct 43010 GGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTT 42951 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 | ||| || || || || ||||| |||||||||||||| || |||||||| Sbjct 42950 GTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATCTT 42891 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672 | ||| | ||| | | || ||| | || | ||| ||||| ||||| || | || Sbjct 42890 GCCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAAGCCAAAGTATTGATAGTT 42831 Query 63673 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 ||||||| ||||| | ||| | |||| || | ||||| | ||| Sbjct 42830 GAAGTCTCTGTCGTAGACAATGGCGGAGTCAAGCTCCTCCTTGTGTTT 42783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633623541012800