Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq199 111 1e-19 >seq199 Length=55906 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| | |||||| | ||||| || || || Sbjct 32834 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACATTGGAAGTCGAATCTTCG 32775 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| || || ||||| ||||| |||||||| Sbjct 32774 GATACGATCGATAATGTAAAGTCTAAGATTCAA-GATAAGGAAGGCATTCCCCCTGACCA 32716 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || || | || |||| || ||| || ||| ||||| Sbjct 32715 GCAGCGACTCATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAA 32656 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || | ||||| || || Sbjct 32655 TATTCAGAAGGAGTCTACTTTGCATTTGGTCCT 32623 Score = 107 bits (118), Expect = 2e-18 Identities = 151/206 (73%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| | |||| |||||||||||||| || ||||||| | || || ||||| || Sbjct 33061 ATGCAAC-AGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 33003 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| ||||| || || ||||| Sbjct 33002 GACACCATCGA--CAATGTCAAGTCGAAGATTCAG-GACAAGGAAGGTATCCCTCCTGAT 32946 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || || || || | ||||||| || || | ||| ||| Sbjct 32945 CAGCAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTAC 32886 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 |||||||| || |||||||| || || Sbjct 32885 AATATTCAGAAGGAATCCACTCTTCA 32860 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || || | |||||||| || ||| Sbjct 32606 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACTTTGGAAGTGGAATCTTCT 32547 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || || | || | ||| ||||| || || || || || ||| Sbjct 32546 GATACCATCGA--CAATGTCAAATCCAAGATTCAG-GACAAGGAGGGCATCCCTCCCGAC 32490 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || | ||||| | ||||| || |||| ||| Sbjct 32489 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTAC 32430 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| ||| | ||| | ||||| Sbjct 32429 AACATCCAGAAGGAAAGCACTTTGCATCTCGTGCT 32395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||| | ||||| || |||| || |||| || ||||| Sbjct 33367 AACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTC 33308 Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||||||||| || || || ||| | || | ||| ||||| || || || || || Sbjct 33307 CTCTGACACTATTGA--CAATGTCAAGTCGAAGATTCA-GGACAAGGAGGGAATCCCGCC 33251 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| ||||| | || || || || || || | || |||| |||||| | || Sbjct 33250 CGACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGA 33191 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||||| || || || || || ||||| Sbjct 33190 CTACAATATCCAGAAGGAGTCAACACTACA 33161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433322359694420