Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq32 129 5e-25 seq199 127 2e-24 seq175 91.5 1e-13 seq64 86.0 5e-12 >seq32 Length=184707 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || ||| |||| ||||| ||||| | Sbjct 81110 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 81169 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 81170 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 81229 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||||| ||||| ||||| || || ||| | |||||| ||||||| | ||| ||| Sbjct 81230 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 81289 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||| | || || || |||| |||| || ||| Sbjct 81290 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGT 81340 >seq199 Length=55906 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || || | ||| | ||||||||| | | Sbjct 32606 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACTTTGGAAGTGGAATCTTCT 32547 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || ||||| || ||||| ||||||||||| || || ||||| || Sbjct 32546 GATACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 32487 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| |||||||| || ||| | || || |||||| | ||| |||||| Sbjct 32486 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 32427 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||| ||| | ||| | || | || |||| || ||| Sbjct 32426 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGGT 32379 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 |||| |||||||| || || || || | ||||| || || | ||||| || || || Sbjct 33369 GTAACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAG 33310 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || || | ||| || |||| || ||||| ||||||||||| || || ||| Sbjct 33309 TCCTCTGACACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCGCCC 33250 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || ||||| || || || || || ||| | |||||| |||||| | || || Sbjct 33249 GACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGAC 33190 Query 22393 TACAACATTCAAAAAGAATCCACCATACA 22421 ||||| || || || || || || |||| Sbjct 33189 TACAATATCCAGAAGGAGTCAACACTACA 33161 >seq175 Length=62467 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || ||| | || || || || |||| ||||| || || || | || || | Sbjct 37876 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 37817 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| ||||| |||||||||||||| ||||| || || || || || | Sbjct 37816 TGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 37757 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | ||||| || ||| | ||||| ||||||||||| || Sbjct 37756 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 37697 >seq64 Length=130623 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || ||||| ||||| || || || |||||||||| ||| | |||||||| Sbjct 44317 ACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAG 44258 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCA-AAG 129251 | |||||||| || | ||||| | || | |||||||||||| ||| | ||| | Sbjct 44257 CACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGA-GCAGCAA 44199 Query 129252 CGAGTTTCGCAAACCGTGCTGTTTAATGT-CtttttttAATTGTGTCCAGTCCCACATCG 129310 |||||| || | |||||||| || || | || || ||||| ||| ||||||| | Sbjct 44198 CGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGT-CCCACTCCCACAACT 44140 Query 129311 ATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC 129350 | || || |||||||| |||| |||| | ||||| Sbjct 44139 CAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACC 44100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419722536715420