Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq233 149 1e-30 seq37 107 4e-18 >seq233 Length=46100 Score = 149 bits (164), Expect = 1e-30 Identities = 442/674 (66%), Gaps = 11/674 (2%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| ||| | |||| ||||| || | Sbjct 21998 GTCGGCTCGCTGTCCGGTGGTTGGAAGATGAAGCTCGCCTTGGCTCGTGCCATGCTTAGG 22057 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || ||||| || | ||| | ||||| | ||| Sbjct 22058 AAAGCCGACGTGCTTCTCCTCGACGAACCTACCAATCATCTCGACGTCGCCAACATCGCC 22117 Query 279816 TGGCTAGTGTCCTACCTAACCAGTC-TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| | | |||||| | | || | ||| | | |||||||| |||||||| Sbjct 22118 TGGCTGGAGAACTACCTCAAGACTCATCCAGACA-TCACCAGTCTCATTGTTTCTCACGA 22176 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 ||| || ||||| || || | | | |||| ||||| |||| || |||||| Sbjct 22177 CTCCGGGTTCCTGGACAATGTCACCACGGACATCTACCACTACGAGCCCAACAAGAAGCT 22236 Query 279935 CTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCT 279993 | | || ||| ||||||||| |||| || |||| || || || ||| ||| Sbjct 22237 GGC-ATGCTACAAGGGCAACCTGGCTGCCTTTGTGGAGGTCCGTCCCGAAGCGAAGTCCT 22295 Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 |||| |||| | | ||| || | ||| | |||||| || || |||| | Sbjct 22296 ACTACACCCTGTCTGCCTCCAACGTCCAGTTCAAGTTCCCTCCTCCGGGAATTCTCACAG 22355 Query 280054 GCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCA 280113 || ||| ||| || || || ||||| | | ||| || | | || |||| Sbjct 22356 GCGTCAAGTCACAGACGCGAGCCATCATTCGCATGAGCAACGTGTCGTACACGTACCCCA 22415 Query 280114 ATGGCCCCAACATCTTCAGCAGT-----GTCAACTCGCAGGTTTCTATGAACTCACGGAT 280168 | |||||||| | || || || ||| || ||| | ||| || || || | Sbjct 22416 A-GGCCCCAAAGCCCTC-GCTGTCCGAAGTCTCCTGTCAGCTGTCTCTGTCTTCTCGCGT 22473 Query 280169 TGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGA 280228 | ||||||| ||||| |||||||| ||||| ||||| ||||| | || || || || Sbjct 22474 GGCCATCATTGGGCCCAACGGTGCGGGCAAGTCCACCCTCATCAAGTTGCTCACCGGTGA 22533 Query 280229 GACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 | | |||| || || ||||||||||||| |||| || | |||| || Sbjct 22534 AAGCATCCCCACCACAGGCAAAGTCGAGAAGCATCCCAACCTGCGCATCGGTTACATCAA 22593 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 ||||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | || Sbjct 22594 GCAGCACGCTCTTGAGCACGTGGAGATGCACCTTGAGAAGACCCCGAACCAGTACCTCCA 22653 Query 280349 GTGGCGCTATGCAA 280362 ||||| ||||||| Sbjct 22654 ATGGCGATATGCAA 22667 >seq37 Length=175084 Score = 107 bits (118), Expect = 4e-18 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||||||||||||| ||||| || ||||||||||| ||||| || || Sbjct 21979 TCTCGTATTGCTGTCATTGGACCCAACGGTGCTGGCAAGTCTACCCTTATCAATGTTTTG 21920 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | || || || |||| ||| |||| ||||| || || || Sbjct 21919 ACTGGTGAG-CTCATCCCTACCCAGGGTGAGATTTATCAGCACGAAAACATCCGTATTGC 21861 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| |||||||| ||| ||||| | Sbjct 21860 CTACATCAAACAGCACGCTTTCGCTCACATCGATAACCACCTTGACTCAACTCCATCTGA 21801 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 21800 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACCATGGACCG 21750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027822735338188