Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq32 170 4e-37 seq199 161 2e-34 seq175 116 7e-21 seq233 104 4e-17 seq64 96.9 6e-15 >seq32 Length=184707 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||| ||| || |||||||| || ||| Sbjct 81339 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 81280 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| ||| ||||| || ||| Sbjct 81279 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 81220 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 81219 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 81160 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 81159 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 81113 >seq199 Length=55906 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || | || ||||| || || || || || ||||| Sbjct 32608 CCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 32667 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||||||||| || ||||||| || ||||| || ||| Sbjct 32668 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 32727 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||||||||| | ||| || ||||| || || | ||||| ||| Sbjct 32728 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 32787 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||| || || | ||||||||||| |||||||| Sbjct 32788 TCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | |||||| || ||||| || ||||| || || || || Sbjct 33137 CCACCTCGAAGGCGGAGAACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAA 33196 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || |||||||| || Sbjct 33197 AGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGG 33256 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| || || ||||| | || || || Sbjct 33257 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGAGGACTCGACC 33316 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || ||||||||||||||||| || ||||| Sbjct 33317 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 33363 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||| || || || || || || |||||| Sbjct 32836 CCACCACGGAGGCGGAGGACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAG 32895 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | || || || || || || Sbjct 32896 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGG 32955 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 32956 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 33015 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||||||||| ||||| || | |||||||| Sbjct 33016 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 33050 >seq175 Length=62467 Score = 116 bits (128), Expect = 7e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || ||||| || || | || || || | |||||| || ||||| || Sbjct 37697 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 37756 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || |||||||| ||||||||||| || || | |||||| || Sbjct 37757 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCA 37816 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| || ||||||||||| Sbjct 37817 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 37875 >seq233 Length=46100 Score = 104 bits (114), Expect = 4e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 224975 GCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGG 225034 ||||| ||||| |||| ||||||||| |||||| | || ||||| |||| | || | Sbjct 22665 GCATATCGCCATTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCATCTCCACGTGCTCA 22606 Query 225035 AAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGA 225094 | ||| ||||| | ||| | ||||||| ||||||||||||| || | || | Sbjct 22605 AGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTCGACTTTG-CCTGT 22547 Query 225095 GTCGGTTGTGC-CTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 | || ||| || |||||||| | ||||||||| || | |||||||||||| ||||| Sbjct 22546 GGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCCCGCACCGTTGGG 22487 Query 225154 GCCAAT 225159 ||||| Sbjct 22486 CCCAAT 22481 >seq64 Length=130623 Score = 96.9 bits (106), Expect = 6e-15 Identities = 528/823 (64%), Gaps = 26/823 (3%) Strand=Plus/Minus Query 30803 TGCAGCAG--GCTTGCTTCTGCA-GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGC 30859 |||||||| || ||| | ||| ||| ||||| ||||||||||||| |||||| | Sbjct 44648 TGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCC 44589 Query 30860 ATAGAACAGCATGGAAGACAT--TGACTTCATAG-AGGGCGCTGCAACGAAGAGGTTCAT 30916 | || |||| || | || || | ||||| ||| || || | || ||| | Sbjct 44588 AGCAAAGTGCATAGAGGTGATCTTGCC--CATAGTAGGATCCTTCAT-GTGGACGTTGAG 44532 Query 30917 GCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCAT 30976 ||| | |||||| | ||| | |||||| || || || | | || || | Sbjct 44531 CGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAACATGACGCTG 44472 Query 30977 AGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGAC-AC 31035 ||| | |||||| |||||||||||| ||||||| || | | | || | || | Sbjct 44471 AGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGTAT---ATTGGGGAT 44415 Query 31036 GTT--GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCC 31093 ||| | ||||| || | |||||| || ||||||||||||| || ||||| || Sbjct 44414 GTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACC 44355 Query 31094 ACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGT 31153 | ||| ||| || | ||| || |||||| || |||| || ||||| | | Sbjct 44354 CATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGAC 44295 Query 31154 CCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGA-TT 31211 ||||| ||| | || || ||| ||||| | ||| ||| | || |||| || Sbjct 44294 ACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAA-AGCACTCATTGTTACC-CAGAATT 44237 Query 31212 TGCGCGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACC---CTTC 31268 |||| |||||| ||||||||||| | ||| || ||| || | | ||| || | Sbjct 44236 TGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCC 44177 Query 31269 TTGACGCGCTCTTCGAGGGTCTTCCAGTCAAGGCGAGTTACC-GGCTCGGTTCCCCAGAG 31327 |||| |||| | || | | ||| || | | | | |||| | ||| | Sbjct 44176 TTGATCTGCTCCTTCAGATTGTCCCACTCCCA-CAACTCAGAAGGCTTGACATTCCACAT 44118 Query 31328 GTGATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTG 31387 || | || | | ||| || |||||||| |||| ||||||| | ||| || || Sbjct 44117 GTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTG 44058 Query 31388 CTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTC 31447 ||||| || || || |||||| || || || ||| || |||| ||||| | Sbjct 44057 CTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 43998 Query 31448 CCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACA-CGT 31506 | |||||| | |||| || ||| || || ||||||||||| ||||| | ||| Sbjct 43997 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 43939 Query 31507 CCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCT 31566 | ||||||||| ||||| || || || || || | |||||||| || | |||| Sbjct 43938 CGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCT 43879 Query 31567 CGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTT 31609 | ||| | ||| |||| |||||| |||||| |||||| Sbjct 43878 CCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 43836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610096340960