Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq64 311 2e-79 seq13 143 5e-29 >seq64 Length=130623 Score = 311 bits (344), Expect = 2e-79 Identities = 1110/1712 (65%), Gaps = 55/1712 (3%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| |||||| | || |||| || | || |||||||||||| |||||| Sbjct 44665 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 44606 Query 243797 AGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 || || ||| |||| | | |||||| | || | ||| ||| || | Sbjct 44605 AGACCCAACTT--CCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCAT----AG---TA 44555 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 || |||| || || |||||| |||||| |||||||| |||| | || | Sbjct 44554 GGA--TCCTT---CATGTGGACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGAT 44500 Query 243915 CTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 | |||||||| ||| | | |||||| ||||| | | |||||||||| | || Sbjct 44499 CGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCT 44440 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| || |||| | ||||||||| | || || || | | | |||| || Sbjct 44439 TGATGTCGGCGGGTATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGT 44380 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCTG--- 244090 | |||| ||| ||| || |||| | || | || ||| || || ||| | Sbjct 44379 TCTTCATGGCATCAGACCAGAGACCCATATCGA-CGAGATCCTTGA---GGAGCCAGGGG 44324 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| || || || | || || ||||||||||| | |||| || ||| Sbjct 44323 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 44264 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 || | || ||| |||| ||||| || |||| ||| || || |||||||| | | | Sbjct 44263 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 44204 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 |||| ||| | | |||||| || ||| | | || | || ||| |||||| Sbjct 44203 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 44144 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | | || ||| |||| ||||||||| || || || | || | | Sbjct 44143 AACTCAGA-AGGC--------TTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAG 44093 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTAC-AGCTCT 244388 |||| ||||| | |||| | |||||| || | || || |||||||| | || Sbjct 44092 GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCAAGAGAGGC 44034 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 ||| ||||| |||| ||||||||||||||||||| |||||| | || ||||||| | Sbjct 44033 TGTC-AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGG 43975 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | || ||| | ||||||| || ||||| || || | Sbjct 43974 GAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACA 43916 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 |||||||||| |||||| ||||| | || || | ||||||| |||| | Sbjct 43915 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACA 43856 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 || || | |||||||||||| ||| || || | ||| ||| ||| ||| ||| Sbjct 43855 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAG 43796 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 ||||| || | || | || || || || | ||||| | | Sbjct 43795 TCGTAGC----GGCCTTCT------TTGTAGTCG--ACGAAGGCAGGAAGGGCAAGAGAG 43748 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| || || ||||| || | | ||||| | ||||| ||||| ||| Sbjct 43747 GCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGG 43688 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || ||||| ||||||| || || ||| ||| ||||||||| |||||| Sbjct 43687 TTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTG 43628 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||| ||||| || || ||| ||||| |||||| | || |||||| | | Sbjct 43627 TACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTC 43568 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 || | ||| |||| | |||||| ||| || ||| || ||||| Sbjct 43567 TGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCA 43508 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCA 244986 ||||| ||| || || | ||||| |||||| || ||| ||||||||| |||| Sbjct 43507 AACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT-CGTTGGGACACATGAGAGTCCA 43449 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || || | | ||| | || ||||||||| || |||||||| || || ||||||| Sbjct 43448 ATCTCCATTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAG 43389 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | | | | || ||| |||| |||||| | || || | ||||||||| || Sbjct 43388 ATCGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACAC 43329 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 ||| ||||||| ||||| | ||||| || | || || || ||||||||||| ||||| Sbjct 43328 GTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTG 43269 Query 245167 GTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 ||| || || | || | |||||||| || || | || | |||||||| || Sbjct 43268 GTCAACGTATCTGGC-AGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATG 43210 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 || |||||||| ||||| | ||| | | | || | | || | || ||| | Sbjct 43209 TACCATTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGA 43150 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 || || || ||||||||| | ||| ||| |||||| ||||| || || || | Sbjct 43149 TACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAA 43090 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 ||||||| |||||||| || ||||| || || |||||||| | |||| | | | Sbjct 43089 TGCTGTCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGG 43030 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 |||||| || || || ||||||||| ||| Sbjct 43029 CGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 42998 >seq13 Length=282089 Score = 143 bits (158), Expect = 5e-29 Identities = 315/459 (69%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| | || | |||| || || | ||||| ||||||||||||||| || ||||| Sbjct 96900 TTCGCCCAGCGCTTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTTT 96959 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||||| || |||||||||||| || ||| | ||||||||| ||||||||||| || || Sbjct 96960 GCCTCGATATTCTGGCTCAAGAAGCGTGGTCT-GATGCCCGGCCTCACCTTCTCTAATGA 97018 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||| ||| | || ||||| |||| | |||||||| || || || |||| || Sbjct 97019 ACTTATCTCTCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCG---CA 97075 Query 42872 CCTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 || | ||| | |||| | ||| | ||| || |||||||| || || || | || Sbjct 97076 TCTTAAGCACCGAGCCAGC-AAGAAAATTATCCAGGATATCATCACCGACGCTGTTGGGA 97134 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGAC 42989 | ||| | ||||| | || || | ||| |||||| | || | ||||||||| | Sbjct 97135 TTGAGCAAGAGTTTTTGACCGAGGCTCTG-CCGTGTGCTCTCCTAGGCATGAACGCCACA 97193 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTC 43046 || ||| |||| || || | | |||||||| | | || ||| | ||| | Sbjct 97194 CTGATGAAGCAA-TATATTGAATTTGTCGCCGATCGCTTATTGGTTGC--TCTTGGTAAC 97250 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | ||||| || | ||||||||| || ||||||||||| || |||| ||| Sbjct 97251 GAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGC 97310 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||| ||||||||||| || | || || ||| Sbjct 97311 AAGACGAACTTCTTCGAGAAGCGAGTTGGAGAATATCAG 97349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326593071680