Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq64 313 3e-80 seq82 91.5 2e-13 >seq64 Length=130623 Score = 313 bits (346), Expect = 3e-80 Identities = 1144/1773 (65%), Gaps = 35/1773 (2%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 44661 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 44602 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 44601 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 44542 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 || ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 44541 GGACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 44482 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 ||| | || ||||| || || ||||||| ||| || || | || |||| Sbjct 44481 CATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGTATAT 44422 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 113861 ||| || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 44421 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 44365 Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 44364 ACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 44305 Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 44304 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 44245 Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 114041 ||| ||||| | ||||||||| ||||||||||| || | || | ||| || | || Sbjct 44244 CCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 44185 Query 114042 CCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 114099 | | ||| | || | ||||| || |||||| || | | || | || | Sbjct 44184 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 44127 Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 | |||||| || || || || ||||||| ||||| || || |||| || || ||| Sbjct 44126 ATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 44067 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 114218 ||||| | | | |||| || || | || ||||| ||||| || || |||| Sbjct 44066 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCT 44008 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 114277 | || || | || | | ||||||| || || || | | || || | | Sbjct 44007 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 43949 Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 43948 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 43889 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||||| ||| | ||| ||| || ||| || | | | || || || | | Sbjct 43888 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 43829 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 114456 || || | |||| || || ||||| | | | || | | || ||| | | | ||| Sbjct 43828 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 43770 Query 114457 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 114516 | ||||||||| | || |||| || || |||| |||||| || ||| Sbjct 43769 GAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 43710 Query 114517 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 114576 ||| || || ||||| |||| || || || |||||| |||| |||||| || || Sbjct 43709 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 43650 Query 114577 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 114636 |||| |||| || ||||||||||| ||||| | || | ||||| || || ||||||| Sbjct 43649 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTC 43590 Query 114637 GAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 114695 ||| || | | ||||| | || | ||| | | ||| | | | || ||||| || Sbjct 43589 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 43531 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 | ||||| |||||| || |||||||| || || | || | || || || || Sbjct 43530 CATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT 43471 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 | || || | ||||| ||| | ||| || || || |||||||||||||| |||| Sbjct 43470 CGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAGATCTG 43411 Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875 ||||||| ||||| ||||||||| ||| || |||||| | || || || | Sbjct 43410 GGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTC 43351 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 |||| || | |||||| | | || |||||||| || || ||||| | || | || | Sbjct 43350 GCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCAC 43291 Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 | | | || || |||||| || || || || ||| || || || |||| Sbjct 43290 C---AGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAA 43234 Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC 115049 |||| |||||||| || | ||| ||||| || || ||| ||| | || | Sbjct 43233 GCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAGAGCCGGTAGCAC 43174 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 || |||| || || || ||||| || ||| ||| ||||| || || | Sbjct 43173 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT 43114 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169 ||||| || ||||||| ||||| || |||| |||| | ||| || || || | Sbjct 43113 TGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTAGAAAACAAGAAG 43054 Query 115170 ACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACAT 115227 ||| || | || || ||||| ||||||||||| || |||| |||||| ||| | Sbjct 43053 ACA--GCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AG 42998 Query 115228 ACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATA 115285 | |||| |||||| | |||||||||||| ||| ||||| || || |||| Sbjct 42997 AGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAATA 42938 Query 115286 CCGATCGAGACCCGCATAAACATGTATTGGGGT 115318 |||| || || |||||| ||||| || ||| Sbjct 42937 CCGACCGCAACGCGCATAGTCATGTGCTGAGGT 42905 >seq82 Length=114185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAA 11015 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 53396 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAGGGCGACTTGGCTTT----GGCAG 53341 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | |||| |||||||||| ||||||||| ||||| ||||| ||||| | || || Sbjct 53340 CACTGAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 53282 Query 11076 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 53281 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 53222 Query 11135 GTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 ||||||||||| || || ||| | ||||| |||| | |||| | | ||||||| Sbjct 53221 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACC 53166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345625329440