Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq32 118 1e-21 seq199 111 2e-19 seq175 102 9e-17 >seq32 Length=184707 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| |||| ||||||||||| || || ||||| || ||| || || | Sbjct 81327 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 81268 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||||||||| || || ||||| |||||||| | || | || ||||||| Sbjct 81267 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 81208 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 81207 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 81149 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || ||||| || || || || || || ||||| || Sbjct 81148 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 81110 >seq199 Length=55906 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| |||| ||||| || | || || |||||||| |||||||| Sbjct 33172 CTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAA 33231 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||||| || | | |||||||||| ||| | || | |||| Sbjct 33232 GATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCC-TGAATCTTCGACTTGACAT 33290 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || |||| || ||||| ||||| || || ||||| | Sbjct 33291 TGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 33350 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 33351 CGAAGATTTGCAT 33363 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||||| ||||||||||| || |||||| ||||||||||| || | Sbjct 32607 ACCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGA 32666 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || |||||||| || || || ||||||||||||||||| | || Sbjct 32667 CAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGG 32726 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || ||||| | | ||| | || | || | | | | ||| || ||||| | Sbjct 32727 AATGCCTTCCTTAT-CTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGA 32785 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| |||||||| || | ||||| || ||||| ||||| Sbjct 32786 CTTCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 >seq175 Length=62467 Score = 102 bits (112), Expect = 9e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||| ||||| || | ||| || || |||| || |||||||| |||||||| | Sbjct 37695 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 37754 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 37755 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 37814 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 37815 CAATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 37874 Query 42199 A 42199 | Sbjct 37875 A 37875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543205548109120