Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq64 239 4e-58 >seq64 Length=130623 Score = 239 bits (264), Expect = 4e-58 Identities = 1096/1718 (64%), Gaps = 58/1718 (3%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| ||| || ||||| |||| || || || ||||| | | |||| | | | Sbjct 42840 TACTTTGGCTTTAAGACTCTAGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTC 42899 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || || |||||||| || |||| ||| || || |||| | Sbjct 42900 GAGCGACCTCAGCACATGACTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAG 42959 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 |||||| | | | | |||| |||| | ||| ||| | || || Sbjct 42960 CGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACA 43019 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCA----CAGATGTCTTCGTGTTTCCTGAT-GACGA 93958 || |||||||| || ||||| ||| ||| ||||||| ||||| || | ||| | Sbjct 43020 CTCTTCAACGCCGGTACCCC----CCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGAC-A 43074 Query 93959 ACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA 94018 |||| ||| ||| ||| || | ||||| |||||| |||||| | ||||| | Sbjct 43075 TGAAGGATGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCA 43134 Query 94019 AATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCC 94078 | || || || ||||| | | |||||| | | ||||| | || || ||||| Sbjct 43135 AGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTG 43194 Query 94079 GCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGG 94138 ||| |||||||| || ||||||||| || | || ||||| || |||||||||||| | | Sbjct 43195 CCGGCACCAATGGTACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTG 43254 Query 94139 CGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGC 94198 | | ||||| |||||||| || | | | ||| | || || |||| ||||||| Sbjct 43255 CCAGATACGTTGACCAGGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGC 43314 Query 94199 CCTGGCACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 | |||||||| |||||| | ||||| | || ||||||||||||| ||||| || Sbjct 43315 CTTGGCACGCAGACGTGTTTGACTTTC-TTGATTTGCGAAAGAACCATGGCAAGGAAGAA 43373 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | || |||||| ||||| ||| | ||||| || || ||||| |||||| Sbjct 43374 AACCGTGCTCGCGATCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTC 43433 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 || || || | |||| ||| | |||||||| || || || || ||| | || | Sbjct 43434 GAAAAGAATGGAGATTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGA---T 43490 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA--------ATCG-CAGGGCAAG 94428 || || || || || || | |||| ||||| | || ||||| Sbjct 43491 TG-CTATGGC-----GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGT 43544 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | ||| ||| ||| |||||| ||| | ||| | || ||| || Sbjct 43545 GGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAA 43604 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| | |||| || ||| |||||| | |||| ||| ||||||| || || Sbjct 43605 ACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAAC 43664 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || ||||| || |||||||| ||||| | ||||| | | || || Sbjct 43665 CTGGGAACCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGAT 43724 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| ||||||| || ||| ||| ||| | ||| | | ||||| ||| |||| Sbjct 43725 GAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTTCCTGCCTTCGT-CGA-----CTAC 43778 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG 94728 | | || | | ||| | || |||| | || | | | | ||| Sbjct 43779 A--AAGAAGGCCGC-TACGACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGT 43835 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||| |||| | | || || ||| |||||| | |||||| ||| ||| Sbjct 43836 AACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAAC 43895 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || ||||| |||||||| | || || |||||| | || ||||| | | || Sbjct 43896 ATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG 43955 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || |||||| ||| ||| ||| || | | || | | || ||||| | ||| Sbjct 43956 CGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATC 44015 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 || ||| ||| ||| | || | | |||||| | | | ||| || || Sbjct 44016 TACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGC---CCCTACTCT 44072 Query 94969 TCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTG 95025 | ||| || || | ||| |||| || ||| |||| |||||| | ||| ||| Sbjct 44073 ACCTTCAAGGGCTCTCCCGCCTCGGAA---GGTATTCTTCAATTCGACATGTGGAATGTC 44129 Query 95026 AAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 ||||| || | ||| || |||| || || | | || || | | | |||||| Sbjct 44130 AAGCCTTCTGAGTTGTGGGAGTGGGACAATCTGAAGGAGCAGA--TCAAGGAGCACGGTA 44187 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| || |||| | || ||||||||||| |||||||| |||| || || || | Sbjct 44188 TTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTA 44247 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 |||| |||| || || || | ||| |||||| | ||| | | || || | || || | Sbjct 44248 ACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTG 44307 Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGG 95261 |||||| ||| ||||| ||||| ||| || |||| | ||||| | ||| Sbjct 44308 AATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCT--CGTCGATATGGGTCTCTGGTC 44365 Query 95262 TGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAAT 95321 ||| | ||||||| | | || ||||| ||| | ||||||||||| | || Sbjct 44366 TGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATCCCCAATAT 44425 Query 95322 ACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG-CGTGATAC 95380 ||| | ||||||||||| |||||||||||||| |||||||| | ||||| | || || Sbjct 44426 ACCCGCCGACATCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTA- 44484 Query 95381 TCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || | || |||| ||||| |||| ||| |||| Sbjct 44485 TCCAGATGGCCGCCGATCGCGGTGCCTTTATCGACCAG 44522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494716595445280