Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq64 203 3e-47 seq32 113 4e-20 seq199 86.0 6e-12 >seq64 Length=130623 Score = 203 bits (224), Expect = 3e-47 Identities = 724/1111 (65%), Gaps = 27/1111 (2%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || || || ||||| || || | | || | ||| ||| | | Sbjct 44325 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 44266 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | || || || || || ||||| | |||| ||||| |||||| || | Sbjct 44265 GCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGA 44206 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || ||| || || || | |||||| | || | ||||||| | ||| |||| Sbjct 44205 GCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCC 44146 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCGGG 153265 ||| | | || || | | |||||||||||| | || | | ||| ||| |||||| Sbjct 44145 ACAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA--GGCGGG 44088 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG-A 153324 | ||| || ||| |||| ||| | || |||||| || || || || | Sbjct 44087 AGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCA 44029 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGCT 153382 | || | | ||| ||||| ||| ||| || || ||||| |||| || || Sbjct 44028 GGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGA 43971 Query 153383 CTCGTACGGCATGCGCAGCAGCAC-AAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | ||||||||||| |||| ||| |||||||| |||||||| | ||| || |||| Sbjct 43970 CTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGA 43912 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 |||||||||| | ||||||| | || | | ||||| || || ||| ||| | Sbjct 43911 TGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 43852 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || ||||||||||| || || ||||||| ||| | | | | || |||| ||| || | Sbjct 43851 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT 43792 Query 153562 AG-GTCAT--TTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAG 153617 || | | | || || | || || | ||| || | ||||| ||| |||| || || Sbjct 43791 AGCGGCCTTCTTTGTAGTCGACGAAGGCA-GGA---AGGGCAAGAGAGGCCAAGTTGCAA 43736 Query 153618 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTT 153677 || || ||| || | | | | ||||| | |||||| | ||| |||||| || Sbjct 43735 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGA 43676 Query 153678 ATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTAC 153737 ||| |||| || | ||| ||||| || | ||||| || || ||| | ||||| | Sbjct 43675 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 43616 Query 153738 GGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACC 153797 || ||| || ||| || | |||| ||| | || | ||| || || | Sbjct 43615 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 43556 Query 153798 CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCG 153857 || || |||||||| | ||| || |||||| || ||||||||| ||||| Sbjct 43555 GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCA 43496 Query 153858 TAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATAT-CGTCGGC 153916 ||||| || || ||||| || |||| | |||||||| || | ||| || | | | Sbjct 43495 TAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCA-ATCTCCATTCTT 43437 Query 153917 GTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 153976 | |||||| |||||| ||||| || | ||| || || | ||| ||||| || Sbjct 43436 TTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACG 43377 Query 153977 GCAATCCTCCGCGCCCATGTTGCGTT-TCAGATTGAGCACGCTATAGATGTCGGCGTGCC 154035 | || ||| | ||||| | | || || || || | | | | | ||| ||||||| Sbjct 43376 GTTTTCTTCCTTG-CCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCC 43318 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGC 154092 | || || | ||||| ||| | ||||| ||| || |||||||| || |||| | Sbjct 43317 AAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATC 43258 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGG 154123 | | ||||||||||| || | |||||| Sbjct 43257 TGGCAGTGTTGTTGAAGACACGAAGCATGGG 43227 >seq32 Length=184707 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || ||||| | | | Sbjct 81304 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 81245 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || || || |||||||| || || || || ||||| ||| || || | | Sbjct 81244 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 81185 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || || ||||| || Sbjct 81184 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGAC 81125 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 81124 GAAAATCTGCAT 81113 >seq199 Length=55906 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || |||||||||||||||| || || ||| || || || || |||| | | Sbjct 32416 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 32475 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATT 138541 || || || || ||||| ||||| || || || ||||| ||| | || | ||| ||| Sbjct 32476 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTC-CTGAATCTTGGATTTGACATT 32534 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||| || | || ||||| || | || | || || ||||||| || || | Sbjct 32535 G-TCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTCTTTCCAGTCAAGGTCTTGA 32593 Query 138602 CAAAAATCTGCAT 138614 ||||||| ||||| Sbjct 32594 CAAAAATTTGCAT 32606 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | ||| | |||| |||||||||| || || |||||||| Sbjct 33137 CCACCTCGAAGGCGGAGAACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAA 33196 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || || | ||||||||||||| ||||| || || Sbjct 33197 AGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGG 33256 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || |||| || | ||||| | ||||| | Sbjct 33257 ATTCCCTCCTTGTC-CTGAATCTTCGACTTGACATTG-TCAATAGTGTCAGAGGACTCGA 33314 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || || || || || || || || ||||||| Sbjct 33315 CCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGG 33365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255774896960